Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme75844g00001 GCATTTCGTGGCTACCAAGACACGCTATATGTAGACCAGGGCATTCAGTTCTACCGTAATTGTGAGATCTCAGGAACCGTTGATTTCATATATGGTCATTCGGCTACCTTAATCCAAAACTCTACAATTTTSGTGAGAAARCCTGCTCAAGGACAAGACAATGTTGTGGTGGCAGATGGCACTGTCCGATACAACAAGTTCAGTACCGGTATAGTCTTGCAAAACTGCTTTATCCTTCCAGATGTTGAGCTAAAGCCGTATCTGCAAACAGTCAAGACTTACTTGGCAAGACCATGGGAGCCATTTTCAACGGCAGTGTTCCTTAATAATTACATCGATGGTTTTGTTCGAAGAGATGGATATAGGATTTGGAGCAATGATCAACCAAACATTGAACCCCCTTACTTTGCAGAATTTGGCAACACTGGACCTGGTGCAGATGCTACAGCAAGAGTCAAATGGGCCAACGGCCTTATCAGCAAGAAGGCGGCTGCTATATTCACAGCTGAACGGTTCATTCATGCTAGCACTTGGTTGCCCGCCACCGGCATTCCTTACGATCATGGCTTGCATTAG 576 0.4497 AFRGYQDTLYVDQGIQFYRNCEISGTVDFIYGHSATLIQNSTIXVRKPAQGQDNVVVADGTVRYNKFSTGIVLQNCFILPDVELKPYLQTVKTYLARPWEPFSTAVFLNNYIDGFVRRDGYRIWSNDQPNIEPPYFAEFGNTGPGADATARVKWANGLISKKAAAIFTAERFIHASTWLPATGIPYDHGLH 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme75844g00001 191 Gene3D - 1 191 IPR012334 -
Trme75844g00001 191 SUPERFAMILY Pectin lyase-like 2 189 IPR011050 -
Trme75844g00001 191 PANTHER PECTINESTERASE 2 180 - -
Trme75844g00001 191 Pfam Pectinesterase 2 175 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme75844g00001 Trme-Chr75844 3 578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme75844g00001 2 190 Carbohydrate Esterase AT2G47030 46.597 3.96e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme75844g00001 K01051 - gmx:100808559 226.483