Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7583g00001 AATATGTTGCATGGTCCAATTCCAATCAGTTTTGGGAACATGAAGGAATTGACTCACTTGGACTTGAGCTATAATGAGCTAATTGGTGAGCTTCCATCCATTATGTCGGGTGTGCAAAGTCTAGTTGGTCTTTATGTGCAGAATAACAAGCTTTCAGGCCATGTCGGCGAGCTTTTCTCAAACTCCATGACATGGAGGATTGAGACAATGAATTTAAGTTGCAATTTCTTTGACGGGAACTTGCCATGGTCTTTGGGAAATCTTTCCTACTTAACAATTTTGGATCTTCACAGAAATCTGTTGACCGGAGAGATTCCTTTAGACCTAGGGAATCTAATGCAACTTGAGTATTTTGATGTTTCAGGTAATCAATTATCCGGAAAAATTCCAGAGAAGCTATGCAGCCTAGTTAATTTGAATTACCTAGATTTGTCTCAAAACAGATTGGAAGGGCCTATTCCTAGAACTGGTATTTGCCAAAACCTATCAAGAGTTAGATTTTTGGGAAACAGGAACCTTTGTGGCCAGATGTTGGGAACAAATTGTGAGGTCAAAAGCATTGGTAGATATGCATTGTTTAATGCATGGAGGCTTGGTGCAATTGCAATCACAGTCATACTAATAACCTTGATCTTTGCTTTTCTTCTGCATAGATGGATTAGCAGAAAGCAAAATGATCCTGAGGAACTCGAGGATCGGAAACTGAACAGTTATGTGGATCAAAATCTTTACTTCTTGAGCAGTAGCAGATCAAAGGAACCTTTGAGTATCAATGTAGCAATGTTTGAGCAGCCTCTTCTGAAGTTAACCTTGGTTGATATCCTTGAAGCTACCGACAATTTCAGCAAGACAAACATAATCGGAGACGGAGGTTTCGGAACTGTGTACAGGGCCACTTTACCAAATGGAAGAACGGTTGCTGTGAAGAAGCTTAGTGAAGCTAAAACGCAGGGTCATCGTGAGTTCATGGCTGAAATGGAAACATTGGGAAAGGTAAAGCATGAAAACCTAGTTGCATTGCTTGGTTATTGCTCAATGGGTGAGGAGAAACTCCTTGTTTATGAATACATGGTAAATGGAAGCTTAGACCTTTGGTTGAGAAACAGGACCGGGGGACTCGAAATCCTCGACTGGAACAAACGTTACAAAATCGCGACGGGTGCAGCAAAAGGATTAACTTTCCTCCATCAGGGTTTTATACCTCACATCATTCATAGGGATGTTAAAGCTAGCAACATTTTACTAAATGAAGATTTTGAGCCAAAAGTTGCTGATTTTGGACTAGCAAGATTGATCAGTGCATGTGAGACTCATATCACAACTGATATTGCTGGAACATTGGGTTACATTCCACCAGAGTATGGACAGAGTGGAAGATCAACAACACGAGGTGATGTCTATAGTTTCGGTGTCATTTTACTTGAATTGGTGACCGGGAAAGAGCCGACAGGACCAGATTTCAAAGAGATTGAAGGTGGAAACTTGGTTGGATGGGTTGGTCAGAAGATCAAGAAAGGACAGGCTGCTGAAGTCCTCGATCCTACGGTTCTCGATGCGGATTCTAAGCAGATGATGCTTCAAATGCTTCAGATTGCTTGTGTCTGTCTCTCTGATAATCCTGCAAACAGGCCTACCATGTCTCAAGTGCACAAATTCTTGAAGGGGATGAAAGGTGATATCAGTAATTAA 1689 0.4127 NMLHGPIPISFGNMKELTHLDLSYNELIGELPSIMSGVQSLVGLYVQNNKLSGHVGELFSNSMTWRIETMNLSCNFFDGNLPWSLGNLSYLTILDLHRNLLTGEIPLDLGNLMQLEYFDVSGNQLSGKIPEKLCSLVNLNYLDLSQNRLEGPIPRTGICQNLSRVRFLGNRNLCGQMLGTNCEVKSIGRYALFNAWRLGAIAITVILITLIFAFLLHRWISRKQNDPEELEDRKLNSYVDQNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATDNFSKTNIIGDGGFGTVYRATLPNGRTVAVKKLSEAKTQGHREFMAEMETLGKVKHENLVALLGYCSMGEEKLLVYEYMVNGSLDLWLRNRTGGLEILDWNKRYKIATGAAKGLTFLHQGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHITTDIAGTLGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVGQKIKKGQAAEVLDPTVLDADSKQMMLQMLQIACVCLSDNPANRPTMSQVHKFLKGMKGDISN 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7583g00001 562 Gene3D Phosphorylase Kinase; domain 1 243 356 - -
Trme7583g00001 562 FunFam serine/threonine-protein kinase BRI1-like 2 357 562 - -
Trme7583g00001 562 SUPERFAMILY L domain-like 1 175 - -
Trme7583g00001 562 Pfam Protein tyrosine and serine/threonine kinase 284 553 IPR001245 GO:0004672|GO:0006468
Trme7583g00001 562 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 557 - -
Trme7583g00001 562 ProSitePatterns Protein kinases ATP-binding region signature. 287 310 IPR017441 GO:0005524
Trme7583g00001 562 ProSiteProfiles Protein kinase domain profile. 281 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme7583g00001 562 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 60 182 - -
Trme7583g00001 562 SMART serkin_6 281 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme7583g00001 562 Gene3D Transferase(Phosphotransferase) domain 1 357 561 - -
Trme7583g00001 562 PRINTS Leucine-rich repeat signature 136 149 - -
Trme7583g00001 562 PRINTS Leucine-rich repeat signature 17 30 - -
Trme7583g00001 562 CDD STKc_IRAK 287 556 - -
Trme7583g00001 562 Gene3D Ribonuclease Inhibitor 1 187 IPR032675 -
Trme7583g00001 562 Pfam Leucine Rich Repeat 17 33 IPR001611 GO:0005515
Trme7583g00001 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Trme7583g00001 562 FunFam serine/threonine-protein kinase BRI1-like 2 242 356 - -
Trme7583g00001 562 SUPERFAMILY Protein kinase-like (PK-like) 262 553 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7583g00001 Trme-Chr7583 73 1858 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7583g00001 1 554 Receptor kinase-like Gene Family AT5G07280 59.278 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trme7583g00001 PK_Tyr_Ser-Thr 5.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7583g00001 - - gmx:100780446 995.342