Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme75724g00001 GATGAAGTCTTCATTGTTGATCGATTAAAAGAATTGATCAAATACAAAGGATACCAAGTAGCTCCGGCTGAGCTCGAAGCGTTGTTGATTTCCCACCCAAACATTTCTGATGCTGCTGTCGTACCATTGAAAGATGAAGTTGCTGGAGAATTACCAGTTGCATTTGTTGTAAGATCAGACGGTTCAAAGATCAGCGAGGATGAAATCAAGCAATACATTTCACAACAGGTTGTATTTTACAAGAGAATAAACAGAGTTTACTTCACAGACACGATTCCTAAAGCGGCCTCAGGCAAAATTCTGCGAAAGCAATTAACTGCAAGACTTAACGATGGTTTGGTGGTGGCCACTTAA 354 0.404 DEVFIVDRLKELIKYKGYQVAPAELEALLISHPNISDAAVVPLKDEVAGELPVAFVVRSDGSKISEDEIKQYISQQVVFYKRINRVYFTDTIPKAASGKILRKQLTARLNDGLVVAT 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme75724g00001 117 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 2 106 - -
Trme75724g00001 117 SUPERFAMILY Acetyl-CoA synthetase-like 3 111 - -
Trme75724g00001 117 FunFam 4-coumarate--CoA ligase 2 11 112 - -
Trme75724g00001 117 Gene3D - 9 113 IPR045851 -
Trme75724g00001 117 Pfam AMP-binding enzyme C-terminal domain 24 99 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme75724g00001 Trme-Chr75724 225 794 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme75724g00001 2 105 Monolignol Biosynthesis Gene Families AT4G05160 60.577 1.25e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme75724g00001 K01904 - gmx:548034 196.052