Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme756g00001 TCATTTCTTGGTATCGACGACACCGTAGACGATTTCTACTTCTCTGTTGTCTCCGAAGATGAAACCGACCCTGACCTCCCTGTCACCGATGACAGGTATGCTGAAGCATTACAGTTTCAAGAAACCTTGTTAGCTTCTCTTATCACTTCTCACCGAGTCCCCTCCTCCTCCATGACCATGTCACCACCACCGCTATCATTGCCGTGGGTAGCATCTTCATCACAAAATGAAGAGTTACTGTTTGAGGAAACCCTTATGGCCACTTCCTCCACATTACCACCGCCATTGCTCTGCGTAGCATCTTCATCACAAACTGTTGATGAAGAGCTACTGTTAGAGGAAACCATTATGGCCTCCTCCATGTTACCACCGCCATTTGTAGCATCTTCATCAAAGGCTGTTGATGACACTACTNNNNNNNNNNANNNGAAATGTTCAGGAACCAGAGATGTTACCATTCCTTTTGTTCTGAATGTGTCATTACTTCCAAAAGAATTGATTGATAGGTGGGATGATGCATTGTCTGAGGCTCTTTTACTTACTGTTCCTAAGTTCTATTGTCCCTTTAAGGATTGTTCTGCGATGTTGCTTAGTGAGAATGAAGGGGTGGGAGATATTAGGGAATCTGAATGCCCTTTTTGTCATAGGCTGTTTTGTGCAAGGTGTTATGTTCCTTGGCATCCTGGAGTTGGTTGTGAGGAGTACCAGAAAATGAATCCGGATGAAAGAGGGAGGGAAGATCTTCTCGTTAGAGAGCTTGCTAAACAGAAGAAATGGAAAAGGTGTCCCAGATGCAGTTGCAAGTTTGAGTTTTGCTATGCTTGTGGAGAAAAATGGACATCTACTCATGGTGGGTGCCAAAGAAATGAGATGCATTTAAGCTTAGCTTGA 891 0.4332 SFLGIDDTVDDFYFSVVSEDETDPDLPVTDDRYAEALQFQETLLASLITSHRVPSSSMTMSPPPLSLPWVASSSQNEELLFEETLMATSSTLPPPLLCVASSSQTVDEELLLEETIMASSMLPPPFVASSSKAVDDTTXXXXXKCSGTRDVTIPFVLNVSLLPKELIDRWDDALSEALLLTVPKFYCPFKDCSAMLLSENEGVGDIRESECPFCHRLFCARCYVPWHPGVGCEEYQKMNPDERGREDLLVRELAKQKKWKRCPRCSCKFEFCYACGEKWTSTHGGCQRNEMHLSLA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme756g00001 296 ProSiteProfiles TRIAD supradomain profile. 81 290 IPR044066 -
Trme756g00001 296 SUPERFAMILY RING/U-box 172 237 - -
Trme756g00001 296 Pfam IBR domain, a half RING-finger domain 184 232 IPR002867 GO:0008270
Trme756g00001 296 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 152 281 IPR031127 GO:0004842|GO:0016567
Trme756g00001 296 SMART ibrneu5 168 232 IPR002867 GO:0008270
Trme756g00001 296 SUPERFAMILY RING/U-box 243 288 - -
Trme756g00001 296 CDD BRcat_RBR_unk 183 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme756g00001 Trme-Chr756 3 2367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme756g00001 184 276 C3H Transcription Factor Family AT2G19610 31.624 3.54e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme756g00001 K11975 - qsa:O6P43_027978 238.81