Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme75662g00001 GGAGCTTGTGGTTTTGGAGAATATGGAAGAACAGTGAATGATGGCAGTGTAGCAGGTGTGTCTAAGCTATGGAAAAATGGTAGTGGTTGTGGTGCATGCTATCAGGTGAGGTGCAAAATACCACAATACTGTGATGAAAATGGAGCAACTGTGGTGGTAACAGACTATGGTGAAGGAGACAGAACAGACTTTATAATGAGTTCTCGTGGTTACTCGAGATTGGGGCGCAATGCAGATGCATCTGCAGAGCTATTCAAATATGGTGTAGTAGATATTGAATACAAAAGAGTTCCAT 295 0.4237 GACGFGEYGRTVNDGSVAGVSKLWKNGSGCGACYQVRCKIPQYCDENGATVVVTDYGEGDRTDFIMSSRGYSRLGRNADASAELFKYGVVDIEYKRVP 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme75662g00001 98 SUPERFAMILY Barwin-like endoglucanases 1 98 IPR036908 -
Trme75662g00001 98 Gene3D - 1 97 IPR036908 -
Trme75662g00001 98 PANTHER EXPANSIN-B3 1 98 - -
Trme75662g00001 98 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 98 IPR007112 -
Trme75662g00001 98 Pfam Lytic transglycolase 17 94 IPR009009 -
Trme75662g00001 98 PRINTS Expansin/Lol pI family signature 87 98 IPR007118 GO:0005576
Trme75662g00001 98 PRINTS Expansin/Lol pI family signature 20 38 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme75662g00001 Trme-Chr75662 56 432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme75662g00001 1 98 Expansin Gene Family AT4G17030 57.576 5.74e-38 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme75662g00001 - - gmx:100779487 197.978