Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme75658g00001 ATGCTTAATATAGAGGGGAGAGACTTGGTGCGGATATTGCTTACAGCAGGAGCTGATCCATCTGCTCARGATTCACAGAAYGGGAGGACAGCTTTGCATACMGCTGCTATGACAAATGATGTGGAATTGGTTCAGGTTATTCTTGCTGCTGGTGTTGATGTGAACACTCGCAATGTGCACAATAGTATACCTCTTCACTTGGCCTTAGCTAG 212 0.4481 MLNIEGRDLVRILLTAGADPSAQDSQNGRTALHTAAMTNDVELVQVILAAGVDVNTRNVHNSIPLHLALA 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme75658g00001 70 Gene3D - 5 70 IPR036770 -
Trme75658g00001 70 ProSiteProfiles Ankyrin repeat region circular profile. 27 58 - -
Trme75658g00001 70 ProSiteProfiles Ankyrin repeat profile. 27 59 IPR002110 GO:0005515
Trme75658g00001 70 Pfam Ankyrin repeats (many copies) 13 68 IPR002110 GO:0005515
Trme75658g00001 70 SUPERFAMILY Ankyrin repeat 7 69 IPR036770 -
Trme75658g00001 70 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 4 70 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Trme75658g00001 70 SMART ANK_2a 27 56 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme75658g00001 9 69 Ion Channels AT4G32500 40.984 3.51e-07 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme75658g00001 K16279 - gmx:100782956 119.783