Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7554g00001 ATGTCCAAAGCTCCCATTCAAAAGTTTGCTGATTATGTAAGTATTCTGGCCGTGCTCTTTGATGGTTTTTATGCTCTGTATACTGCTGGGGCTCTTGGAGCTTACCCGGATGAATGGCTGCCGGAAAATGGAAATCACTTCGTTTTTGCCCTTATGTTTTCTATATCTGTTGTGGTGATTGCATGCCCATGTGCACTTGGTTTGGCAACACCAACTGCTGTCATGGTGGCAACTGGGGTTGGGGCAAACAACGGTGTGTTGATTAAAGGAGGAGAATCCTTAGAAAGGGCTCAGATGGTGAAGTATGTTATATTTGATAAAACCGGAACTCTAACTCAGGGTAAAGCCACTGTCACTGTTGCCAAGGTGTTTGCAGGAATGGACCGTGGAGAATTTCTTAAATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCGCTGGCAAAAGCGATATTACAATATGCACGCCATTTTCACTTCTTTGATGGGTCCTCTCTTACCAATGGTTCCCAGAATGATGTCAATGAGTTAAAATCAGGGTGGCTTTATGATGCCTCAGACTTCTCTGCTATTCCAGGAAGGGGTGTGCA 590 0.4525 MSKAPIQKFADYVSILAVLFDGFYALYTAGALGAYPDEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGESLERAQMVKYVIFDKTGTLTQGKATVTVAKVFAGMDRGEFLKLVASAEASSEHPLAKAILQYARHFHFFDGSSLTNGSQNDVNELKSGWLYDASDFSAIPGRGV 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7554g00001 196 Pfam E1-E2 ATPase 2 83 - -
Trme7554g00001 196 NCBIfam HAD-IC family P-type ATPase 39 125 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme7554g00001 196 Pfam haloacid dehalogenase-like hydrolase 100 168 - -
Trme7554g00001 196 FunFam Copper-transporting ATPase RAN1 111 196 - -
Trme7554g00001 196 ProSitePatterns E1-E2 ATPases phosphorylation site. 106 112 IPR018303 -
Trme7554g00001 196 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 196 - -
Trme7554g00001 196 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 106 196 IPR023299 GO:0000166
Trme7554g00001 196 Gene3D - 109 196 IPR023299 GO:0000166
Trme7554g00001 196 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 96 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7554g00001 Trme-Chr7554 19 1807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7554g00001 1 196 Primary Pumps ATPases AT5G44790 74.257 1.01e-96 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7554g00001 K17686 - gmx:100778219 321.242