Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7553g00001 ATGAACAATTGGAGGATGAATCTCATTGCATCTGTGGACAATGTATCTGATGATGATACTTATACTCTATATGATTTTGAAAATGATCGTGTGTTTGGTTGGGAGCTGATAGTGAGTGAGGCTTATGCAAGTAACACAACAAATCAAGTTTTGCACATTCCACCACGTACTGCTAAGTGTGTACTTAGAGACAAGAAAAGCATTCTCATTAAAACTCAACACAATTTGGATGGAACCAAATGCACCATCAAGGCTTACACTAGGAAGATAGGAAAGAAGGAAATGTATTTAACTGAAGGATGGTATGAATTTAAGAAAGCTAACAGACTTAGAGAGGGAGACAAGCTGGAATTTCAACTTTCTAATCATCCACCTGAGGTTGTGATTGTTGACATTGTTCGTCGCAACAGTTGA 414 0.3768 MNNWRMNLIASVDNVSDDDTYTLYDFENDRVFGWELIVSEAYASNTTNQVLHIPPRTAKCVLRDKKSILIKTQHNLDGTKCTIKAYTRKIGKKEMYLTEGWYEFKKANRLREGDKLEFQLSNHPPEVVIVDIVRRNS 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7553g00001 137 ProSiteProfiles B3 DNA-binding domain profile. 36 136 IPR003340 GO:0003677
Trme7553g00001 137 Gene3D - 29 136 IPR015300 -
Trme7553g00001 137 SUPERFAMILY DNA-binding pseudobarrel domain 43 132 IPR015300 -
Trme7553g00001 137 CDD B3_DNA 51 122 IPR003340 GO:0003677
Trme7553g00001 137 Pfam B3 DNA binding domain 44 135 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7553g00001 Trme-Chr7553 880 1376 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme7553g00001 B3 2.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7553g00001 - K00368 tpra:123909626 152.525