Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme75479g00001 AGTCGGAGCCGGAGTCAGAGCCGGAGCCCTCCTCGTGGTTTTAGGCGGGATTCAGGCGTTGATGACAGAAAAAGGATGAGGGTTGTAGGATCAACGCGACCGTGCAGAGATTTTGCTGTTGGTAAATGCAGAAGAGGCAGTCTTTGCAATTTTCTGCATCATGATGATAACCAAAACCGTGAGAATAGTTGGGAGGGTAAGCACAGGGAAGATAGAGCTCCCAGATACTCTGCTACCCATGAGAGAGGTGACCATTCTCTTAAGMGTGGTAGATCWAATGAAGCTTGTATAAATTTTGCAAAAGGCAGTTGTAGAATGGGAGCATCTTGCAAGTTTATGCACGATAACGATTCTGACGGATATGGTAAAGTTTCTAGGGATGAATTCACTAGAGAAAGGGAAGATAGAGCTCCCAGATATCCTGCTGCCCATGAGGACGGGGACCATTCTCTTAGGAGGGGCAGATCTAATGAAGTTTGTACAAATTTTGCAAAAGGCAGGTGTAGAATGGGAACATCTTGCAAGTTTGTGCATGATAACGATTCTGATGGATATGGCAAAGTTTTTACGGATGAATTCACTAGAGAAAGGGAAATTGACAGAAGGCACAGAGATAATTCTTTTGAGCAGGGTGGCCGGCATGCAAGCATGTAG 654 0.4511 SRSRSQSRSPPRGFRRDSGVDDRKRMRVVGSTRPCRDFAVGKCRRGSLCNFLHHDDNQNRENSWEGKHREDRAPRYSATHERGDHSLKXGRSNEACINFAKGSCRMGASCKFMHDNDSDGYGKVSRDEFTREREDRAPRYPAAHEDGDHSLRRGRSNEVCTNFAKGRCRMGTSCKFVHDNDSDGYGKVFTDEFTREREIDRRHRDNSFEQGGRHASM 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme75479g00001 217 ProSiteProfiles Zinc finger C3H1-type profile. 90 117 IPR000571 GO:0046872
Trme75479g00001 217 ProSiteProfiles Zinc finger C3H1-type profile. 30 56 IPR000571 GO:0046872
Trme75479g00001 217 ProSiteProfiles Zinc finger C3H1-type profile. 154 181 IPR000571 GO:0046872
Trme75479g00001 217 SMART c3hfinal6 31 55 IPR000571 GO:0046872
Trme75479g00001 217 SMART c3hfinal6 155 180 IPR000571 GO:0046872
Trme75479g00001 217 SMART c3hfinal6 91 116 IPR000571 GO:0046872
Trme75479g00001 217 MobiDBLite consensus disorder prediction 10 26 - -
Trme75479g00001 217 SUPERFAMILY CCCH zinc finger 30 57 IPR036855 GO:0046872
Trme75479g00001 217 Pfam CCCH-type zinc finger 159 179 IPR041367 -
Trme75479g00001 217 MobiDBLite consensus disorder prediction 1 26 - -
Trme75479g00001 217 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 54 IPR000571 GO:0046872
Trme75479g00001 217 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 115 IPR000571 GO:0046872
Trme75479g00001 217 SUPERFAMILY CCCH zinc finger 91 115 IPR036855 GO:0046872
Trme75479g00001 217 SUPERFAMILY CCCH zinc finger 155 179 IPR036855 GO:0046872
Trme75479g00001 217 MobiDBLite consensus disorder prediction 54 87 - -
Trme75479g00001 217 MobiDBLite consensus disorder prediction 128 150 - -
Trme75479g00001 217 Gene3D - 21 80 - -
Trme75479g00001 217 Gene3D - 145 211 - -
Trme75479g00001 217 Gene3D - 81 144 - -
Trme75479g00001 217 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 2 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme75479g00001 Trme-Chr75479 1 743 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme75479g00001 zf-CCCH 6.6e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme75479g00001 - K22909 gmx:100783856 227.254