Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7538g00001 GTTGATTATGCATGCACACCAGAGGAAGTGCAGCAACACTTTCAGTCATGCGGTACAGTGAACAGGGTCACTATCCTGACAGACAAGTTTGGTCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAACTGAAGCTGTTCAAGAGGCTATCCTGTTGACTGAATCTGAATTGCATGGACGTCAATTGAAAGTTCTGCCTAAGAGGACTAATGTCCCTGGAATGAAACAATACCGTCCTAGGCGATTCAATCCTTACATGGCATATGGCTTCAGGAGGCCTTATGCTCCTCCTTACATGTACTCCCCTTATGGATATGGGAAGGCTCCTAGGTTTAGAAGGCCAAATCGTTACATGCCATATTATTAG 369 0.4417 VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVETEAVQEAILLTESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMAYGFRRPYAPPYMYSPYGYGKAPRFRRPNRYMPYY 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7538g00001 122 SMART rrm1_1 1 66 IPR000504 GO:0003723
Trme7538g00001 122 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 64 IPR000504 GO:0003723
Trme7538g00001 122 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 70 IPR000504 GO:0003723
Trme7538g00001 122 CDD RRM_II_PABPs 1 66 - -
Trme7538g00001 122 Gene3D - 1 74 IPR012677 -
Trme7538g00001 122 SUPERFAMILY RNA-binding domain, RBD 2 91 IPR035979 GO:0003676
Trme7538g00001 122 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7538g00001 Trme-Chr7538 589 1172 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7538g00001 1 65 Eukaryotic Initiation Factors Gene Family AT2G36660 34.848 7.42e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7538g00001 K14396 - gmx:100789721 251.136