Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme75323g00001 | ATGAAGATTGTGACTATTAAAGCAACATATAGAGATGATATCATAAGGTTTAGGGTGTCTTTGAACTGTGGCATTGTGGAATTGAAAGAAGAAATTTCCAAAAGATTAAAACTAGAGGTAGGGACATTTGATATCAAGTATTTGGATGATGATCAAGAGTGGATTTTGGTGGCATGTGATGCTGACCTGCAGGAGTGTATGGATATTTTAACATCATCAGGCAGCAATACTATCAGGCTTGTTGTGGATGATATTGTGTCCATTCTTGGAAGCTCTGTTGAGAGCTCAGAGTAG | 294 | 0.3776 | MKIVTIKATYRDDIIRFRVSLNCGIVELKEEISKRLKLEVGTFDIKYLDDDQEWILVACDADLQECMDILTSSGSNTIRLVVDDIVSILGSSVESSE | 97 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme75323g00001 | 97 | PANTHER | PROTEIN NLP8 | 3 | 96 | IPR045012 | GO:0003700 | |
| Trme75323g00001 | 97 | ProSiteProfiles | PB1 domain profile. | 3 | 85 | IPR000270 | GO:0005515 | |
| Trme75323g00001 | 97 | FunFam | RWP-RK domain-containing protein | 1 | 84 | - | - | |
| Trme75323g00001 | 97 | Pfam | PB1 domain | 4 | 84 | IPR000270 | GO:0005515 | |
| Trme75323g00001 | 97 | SUPERFAMILY | CAD & PB1 domains | 3 | 88 | - | - | |
| Trme75323g00001 | 97 | Gene3D | - | 2 | 84 | - | - | |
| Trme75323g00001 | 97 | SMART | PB1_new | 3 | 85 | IPR000270 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme75323g00001 | Trme-Chr75323 | 121 | 414 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme75323g00001 | 1 | 96 | NLP Transcription Factor Family | AT4G24020 | 63.542 | 8.89e-40 | 137 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme75323g00001 | - | - | mtr:25479714 | 175.252 |