Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme75240g00001 GGCAAGTTCAAGACTGTGGCTGAGGCTGTGGCATCTGCACCTGACAATGGTAAGACAAGGTATGTTATCTATGTGAAAAAGGGAACCTACAAAGAGAAAGTAGACATCAGTAGTAAAAAGAAGAATGTGATGCTCGTGGGTGATGGTATGGATGCAACGATAATCACAGGMAGCTTAAATGTCATCGATGGAACGGGTACCTTCCAAAGTGCAACAGTTGCTGCTGTTGGAGATGGGTTTATAGCCCAGGACATTGGGTTCCAAAACACTGCAGGCCCAGAGAAGCATCAGGCAGTTGCTCTCCGTGTTGGCTCTGATCAATCTGTCATCAACCGCTGCAAAATTGACGCATTTCAAGACACTCTTTACGCACACTCCAACCGGCAATTTTACCGTGACTCCTTCATTACCGGTACCATTGACTTTATCTTTGGAAACGCAGCTGTTGTGCTCCAGAAGTGCAAACTCGTAGCCCGAAAGCCCATGAGCAACCAAAAAAACATGGTTACAGCCCAAGGTCGACTAGACCCAAACCAAAACACTGCAACTTCAATTCAGCAATGTGACGTAATACCAAGCACTGACCTCAAACCTGTGATAGGCTCCATCAAAACTTACCTAGGCCGCCCATGGAAGAAATACTCCAGGACTGTTGTGTTGCAATCCTTGATAGGCAACCACATCGACCCAACAGGATGGGCTGAATGG 708 0.4675 GKFKTVAEAVASAPDNGKTRYVIYVKKGTYKEKVDISSKKKNVMLVGDGMDATIITGSLNVIDGTGTFQSATVAAVGDGFIAQDIGFQNTAGPEKHQAVALRVGSDQSVINRCKIDAFQDTLYAHSNRQFYRDSFITGTIDFIFGNAAVVLQKCKLVARKPMSNQKNMVTAQGRLDPNQNTATSIQQCDVIPSTDLKPVIGSIKTYLGRPWKKYSRTVVLQSLIGNHIDPTGWAEW 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme75240g00001 236 Gene3D - 1 236 IPR012334 -
Trme75240g00001 236 PANTHER PECTINESTERASE 1 236 - -
Trme75240g00001 236 ProSitePatterns Pectinesterase signature 1. 17 36 IPR018040 -
Trme75240g00001 236 SUPERFAMILY Pectin lyase-like 1 236 IPR011050 -
Trme75240g00001 236 FunFam Pectinesterase 4 1 236 - -
Trme75240g00001 236 Pfam Pectinesterase 1 236 IPR000070 GO:0030599|GO:0042545
Trme75240g00001 236 ProSitePatterns Pectinesterase signature 2. 136 145 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme75240g00001 Trme-Chr75240 2 796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme75240g00001 1 236 Carbohydrate Esterase AT1G11580 74.576 1.30e-130 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme75240g00001 K01051 - gmx:100815836 417.157