Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme75178g00001 | ATGATACACAATGATTGGGGCAATTCAATCTATCCATTAGTTCCAGGGCATGAACTTGTGGGTGTAGTAACTGAAGTGGGAAGCAAAGTAGAAAAGTTTAAWGTTGGAGACAAAGTAGGTGTGGGATACATGGTTGATTCATGTCGCTCGTGCGAAAATTGTGACGACAATRTTGAGAATTATTGTCCCCAACTTACAGTCACTTGTGGTGCCAAGTATCGCGATGGCACCGTTACATATGGAGGTTACTCCGACTCAATGGTTGCAGACGAGCACTTTGTTATCCTTATTCCTGATAACTTACCTCTTGATGTTGCCGGTCCTCTCCTTTGTGCTGGTGTTACA | 345 | 0.4319 | MIHNDWGNSIYPLVPGHELVGVVTEVGSKVEKFXVGDKVGVGYMVDSCRSCENCDDNXENYCPQLTVTCGAKYRDGTVTYGGYSDSMVADEHFVILIPDNLPLDVAGPLLCAGVT | 115 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme75178g00001 | 115 | Gene3D | - | 1 | 115 | - | - | |
| Trme75178g00001 | 115 | PANTHER | ALDEHYDE REDUCTASE | 1 | 115 | IPR047109 | GO:0016616 | |
| Trme75178g00001 | 115 | Pfam | Alcohol dehydrogenase GroES-like domain | 7 | 95 | IPR013154 | - | |
| Trme75178g00001 | 115 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 16 | 30 | IPR002328 | GO:0008270|GO:0016491 | |
| Trme75178g00001 | 115 | SUPERFAMILY | GroES-like | 2 | 115 | IPR011032 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme75178g00001 | Trme-Chr75178 | 1 | 467 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme75178g00001 | 1 | 115 | Monolignol Biosynthesis Gene Families | AT4G37980 | 68.696 | 3.28e-54 | 169 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme75178g00001 | K23232 | - | gmx:100816901 | 201.83 |