Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7508g00001 ATGGAGGATAATGGCCTTAAGCCAATTGCATTTGCTTGTAGAGAAACACAAGTGCAAGAACTGGAGCAAAATGAACTGACCTTGTTAGCACTGGTAGGTCTCAAATTCAAGTGTCAAGAATCAACAAAATTATCGTTGCAAAATCTCAAGAAGAATAATGGAATAGAAATTAAATTGGTCTCGGAGGATCACATCATGGTAGTGAAAGACATGGCTTGTGAACTGAGAATAGAAGTGCCGATTAACGGTCACCTTGAAGGAAAAGAACTTCAAGATTTGAATGACAAAGAAAGATTAGTTAAAGTGGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAAAAGGTTGATGACTAATCATACTTCAGAAGTTCTAAAGCTAGCTGATGTAGGGATAGTTCATAACTCTCTAAGAAGAACAATTGATGGTAGAGAGAAATCTGGTATAACTATCACGTTTCAGTGCACTGGTAATTCTCCCTTAACAGCAATCCAATTGATTTGGGTGAACACGCTAATGTGTATTCTGGGCAGTCTAATGATGGTGATGGAATTAAGTAGCGAGGATGAACTCAAACAACCATCTGATAAGAATCAACCAATTATAACCAAGAAAATATGGAAAAACATAGTTTTTCAGGTTTTCTATCAGGCTTCTGCATGTATGATACTTGAGTTTGGGGGACATGTAACTGACAGTGAAAAGCAAGTTGTGGTAATTGAGTATGCAAGAGGCCTAGCAGATTGTATGCGACTGAATGCCGCTGGATGGACTATCTGTGTCCTGGTCAGTGCTGTTTCATGGGTACTTGAATGGACCTTGAAGAAGATCTTTTCAGTTTTTTTCAGCATCAATTATAGTTCACCCTTGGACTCTCAAGAGTCTACCCCACAACCTTTGTTCTATCTTTATTGGGGGCTTTCATTTATGATGCTTCTTTTGTTCCCTATAGGACTAGCAGGTATGACATTTCATTGA 1044 0.3487 MEDNGLKPIAFACRETQVQELEQNELTLLALVGLKFKCQESTKLSLQNLKKNNGIEIKLVSEDHIMVVKDMACELRIEVPINGHLEGKELQDLNDKERLVKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRLMTNHTSEVLKLADVGIVHNSLRRTIDGREKSGITITFQCTGNSPLTAIQLIWVNTLMCILGSLMMVMELSSEDELKQPSDKNQPIITKKIWKNIVFQVFYQASACMILEFGGHVTDSEKQVVVIEYARGLADCMRLNAAGWTICVLVSAVSWVLEWTLKKIFSVFFSINYSSPLDSQESTPQPLFYLYWGLSFMMLLLFPIGLAGMTFH 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7508g00001 347 Coils Coil 136 141 - -
Trme7508g00001 347 Pfam Cation transporting ATPase, C-terminus 181 252 IPR006068 -
Trme7508g00001 347 SUPERFAMILY Calcium ATPase, transmembrane domain M 173 304 IPR023298 -
Trme7508g00001 347 Gene3D - 169 259 - -
Trme7508g00001 347 Coils Coil 102 102 - -
Trme7508g00001 347 PANTHER CATION TRANSPORTING ATPASE 177 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7508g00001 Trme-Chr7508 216 1510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7508g00001 178 299 Primary Pumps ATPases AT3G22910 27.011 6.18e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7508g00001 K01537 - gmx:102661547 262.692