Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme75002g00001 GGAGCATGTGGTTATGATGATACTTTTCATGCTGGATTTGGAGTGAACACAGCAGCAGTGAGCACTATGCTATTCAGAGATGGTGAGGTTTGTGGTGCTTGCTACCAAGTTATATGTGACTATCGAATTGACCCAAAATGGTGTCTTAGAAGTCGAAGTGTCACAATAACTGCAACAAATTTTTGCCCTCCAAACAACCATGGAGGATGGTGTGATCCTCCTAACCATCACTTTGATATGTCAATGCCTNCTTTCCTTCGCATTGCACAACAAGGCAATGAAGGCATTGTTCCTATCCTTTATAGAAGGTAG 312 0.4231 GACGYDDTFHAGFGVNTAAVSTMLFRDGEVCGACYQVICDYRIDPKWCLRSRSVTITATNFCPPNNHGGWCDPPNHHFDMSMPXFLRIAQQGNEGIVPILYRR 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme75002g00001 103 SUPERFAMILY Barwin-like endoglucanases 1 103 IPR036908 -
Trme75002g00001 103 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 103 IPR007112 -
Trme75002g00001 103 CDD DPBB_EXPA_N 1 103 - -
Trme75002g00001 103 Gene3D - 1 103 IPR036908 -
Trme75002g00001 103 PRINTS Expansin signature 54 64 IPR002963 GO:0009664
Trme75002g00001 103 PRINTS Expansin signature 68 85 IPR002963 GO:0009664
Trme75002g00001 103 PRINTS Expansin signature 12 26 IPR002963 GO:0009664
Trme75002g00001 103 PRINTS Expansin signature 41 52 IPR002963 GO:0009664
Trme75002g00001 103 PRINTS Expansin/Lol pI family signature 21 39 IPR007118 GO:0005576
Trme75002g00001 103 PRINTS Expansin/Lol pI family signature 94 103 IPR007118 GO:0005576
Trme75002g00001 103 SMART dpbb_1 17 101 IPR007112 -
Trme75002g00001 103 PANTHER EXPANSIN-A15 1 103 IPR002963 GO:0009664
Trme75002g00001 103 Pfam Lytic transglycolase 17 101 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme75002g00001 Trme-Chr75002 225 536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme75002g00001 1 103 Expansin Gene Family AT3G15370 68.932 1.09e-51 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme75002g00001 - - tpra:123895359 223.787