Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme748522g00001 ATGATGATCATGCCAGCACTCATATTTGGAAATTCTATGAAAGAGCTAGGTGGTAAAATGAAGGATGCGTTCGGAGTTGCTGGTAGCATAGCAGAACAAGCAATCTCATCGGTTCGAACTGTTTATTCGTATGTAGGTGAGAAGCAAACACTGAAAAGGTTTAGTTCTGCTCTTGAAACATGTATGCAGCTTGGCATAA 199 0.407 MMIMPALIFGNSMKELGGKMKDAFGVAGSIAEQAISSVRTVYSYVGEKQTLKRFSSALETCMQLGI 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme748522g00001 66 Pfam ABC transporter transmembrane region 3 66 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme748522g00001 66 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 66 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme748522g00001 66 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 3 65 IPR039421 -
Trme748522g00001 66 Gene3D ABC transporter type 1, transmembrane domain 3 66 IPR036640 GO:0005524|GO:0016020
Trme748522g00001 66 SUPERFAMILY ABC transporter transmembrane region 2 64 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme748522g00001 Trme-Chr748522 1 199 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme748522g00001 8 65 Calmodulin-binding Proteins AT2G36910 32.759 1.39e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme748522g00001 K05658 - gmx:100804664 102.834