Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme74842g00001 ATGAATTTATTTATTTTTTGGTTATTTATAGTTGGAGTTGAAGGTGAGGACTCAAATATTGAGTTGCTCTTGAGCGAAGTCAAGGGGAAAGATTTTGCTGAGCTTATTGCAAGTGGAAGGGAAAAATTGGCTTCCGTTCCATCTGGTGGTGGTGCAGTTGCTGTTTCTGCTGCACCTGGTGGAGGTGCTGGAGCTGCTGCCGCACCTGCTGCTGAAGCAAAGGAGGAAAAGAAGGTTGAAGAAAAGGAAGAGTCCGATGATGACATGGGCTTCAGCTTGTTTGACTAA 288 0.4479 MNLFIFWLFIVGVEGEDSNIELLLSEVKGKDFAELIASGREKLASVPSGGGAVAVSAAPGGGAGAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme74842g00001 95 Hamap 50S ribosomal protein L12 [rpl12]. 3 95 IPR027534 GO:0003735|GO:0005840|GO:0006414
Trme74842g00001 95 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 10 95 IPR044076 GO:0002182|GO:0003735|GO:0022625
Trme74842g00001 95 Gene3D - 8 40 IPR038716 -
Trme74842g00001 95 Pfam 60s Acidic ribosomal protein 11 94 - -
Trme74842g00001 95 MobiDBLite consensus disorder prediction 59 95 - -
Trme74842g00001 95 MobiDBLite consensus disorder prediction 71 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme74842g00001 Trme-Chr74842 256 637 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme74842g00001 11 51 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 85.366 2.47e-17 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme74842g00001 K02943 - nnu:104588014 78.1814