Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7476g00001 ATGGATGGAAACAAAGACGATGCATTGAAATCGTTGAAAATCGGTAAAGAAGCGTTAGAAAGTGGAGATCGTAATCGCGCTTTGAAGTTTCTTAACAAAGCTCGCCGTCTCGATCCAACTCTTCCAATCGATGATCTGCTTTCCACCATAGACAGCGATGCAGGCGATCATCCCACAGCAGCTGCCGAGCCGCGGCCGAATAAATCGGATCAACCTTCTATTCGTCGAAGGACTGCCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAAGAGAAATTAAGAGGAAGAAGAATTATTATGATATTTTAGGGTTGGAGAAGAATTGCACGGTGGATGATGTGCGAAAATCGTATAGGAAGCTGTCTTTGAAGGTTCATCCCGACAAGAACAAAGCCCCGGGAGCTGAGGAAGCGTTTAAGTCCGTTTCGAAGGCTTTTCAGTGTCTTAGTAATGAGGAGAGTAAGAGAAAGTATGATCTTTCTGGAGAAGATGAGATTGTTTATGAAAGGCGCGCAGCTGCGAGACCAGCGGCTAGAGGTTTTAATGGTTACTATGAGGCTGATATTGATGCTGAGGAAATATTTAGGAATTTCTTCTTTGGAGGAATGGCACCTGCTGCTAATTTTGGTGGGTTTAGTTTTGGTGGGCCGGGGATGGCTCATCGACAGGCTGCTGCTGATAATGGCTCTGGCGGGTTCAATGTTCGTGCTTTGATTCAGTTGCTTCCGGTGCTTCTTATTTTGCTTCTTAACTTTTTGCCTTCGTCGGATCCGGTGTATACTCTTCAGCAGAACTATCCTTATGAACACCGGCTTACTACACCGAAGGGCGTTAACTACTATGTTAAGTCTACTAAGTTTGAAGAAGATTATCCGTTGGATAGCCGTGAACGTGTTACGATTGAGGAACGGGTTGAGAGGGAATACTTTGGTATTCTTCGCCAGAATTGTCAGTTTGAGATTCAGCGACGCCAGTGGGGATATATCCGGGAAACGCCTCACTGCGATATGCTTCGGAAGTTTGATTTGGTCCGTTGA 1071 0.4267 MDGNKDDALKSLKIGKEALESGDRNRALKFLNKARRLDPTLPIDDLLSTIDSDAGDHPTAAAEPRPNKSDQPSIRRRTAXXXXXXXXXXXXXXXXXXXXXXREIKRKKNYYDILGLEKNCTVDDVRKSYRKLSLKVHPDKNKAPGAEEAFKSVSKAFQCLSNEESKRKYDLSGEDEIVYERRAAARPAARGFNGYYEADIDAEEIFRNFFFGGMAPAANFGGFSFGGPGMAHRQAAADNGSGGFNVRALIQLLPVLLILLLNFLPSSDPVYTLQQNYPYEHRLTTPKGVNYYVKSTKFEEDYPLDSRERVTIEERVEREYFGILRQNCQFEIQRRQWGYIRETPHCDMLRKFDLVR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7476g00001 356 CDD DnaJ 109 162 IPR001623 -
Trme7476g00001 356 MobiDBLite consensus disorder prediction 46 75 - -
Trme7476g00001 356 ProSiteProfiles dnaJ domain profile. 109 173 IPR001623 -
Trme7476g00001 356 PRINTS DnaJ domain signature 129 144 IPR001623 -
Trme7476g00001 356 PRINTS DnaJ domain signature 145 165 IPR001623 -
Trme7476g00001 356 PRINTS DnaJ domain signature 111 129 IPR001623 -
Trme7476g00001 356 PANTHER AT29763P-RELATED 1 351 - -
Trme7476g00001 356 Pfam DnaJ domain 109 170 IPR001623 -
Trme7476g00001 356 SMART dnaj_3 108 165 IPR001623 -
Trme7476g00001 356 ProSitePatterns Nt-dnaJ domain signature. 150 169 IPR018253 -
Trme7476g00001 356 Pfam Domain of unknown function (DUF1977) 265 336 IPR015399 -
Trme7476g00001 356 Coils Coil 102 107 - -
Trme7476g00001 356 FunFam Chaperone protein dnaJ 49 105 221 - -
Trme7476g00001 356 SUPERFAMILY Chaperone J-domain 106 225 IPR036869 -
Trme7476g00001 356 Gene3D DnaJ domain 105 220 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7476g00001 Trme-Chr7476 41 1111 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7476g00001 104 181 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.366 2.26e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7476g00001 K09518 - gmx:100788812 510.76