Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme747568g00001 ATGCCCAATGGTTCTCTTGATAAATACATTTCTACTAAAGAGGATGCTATCTCGTTGACATCAAAGAAAATGTATGAGATATCTCTTGGAGTGGCTCGTGGAATCGCTTATTTGCATCAAGGTTGTGATATGCAAATCTTGCATTTTGACATCAAACCCCACAACATCCTTCTTGACGAGAACTTTATCCCCAAG 195 0.3897 MPNGSLDKYISTKEDAISLTSKKMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDENFIPK 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme747568g00001 65 ProSiteProfiles Protein kinase domain profile. 1 65 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme747568g00001 65 SUPERFAMILY Protein kinase-like (PK-like) 1 65 IPR011009 -
Trme747568g00001 65 ProSitePatterns Serine/Threonine protein kinases active-site signature. 46 58 IPR008271 GO:0004672|GO:0006468
Trme747568g00001 65 Pfam Protein kinase domain 1 61 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme747568g00001 65 Gene3D Transferase(Phosphotransferase) domain 1 1 65 - -
Trme747568g00001 65 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 65 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme747568g00001 Trme-Chr747568 31 225 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme747568g00001 1 65 Receptor kinase-like Gene Family AT1G66910 56.923 3.58e-22 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme747568g00001 Pkinase 1.6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme747568g00001 - - tpra:123893228 131.339