Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme745g00001 ACTAATAGTTACAGAGGAGATATGGGTAAGAATGCTAAGAAATGCACTAAAACTAAAGATGGGAATGAGAGAAGCTGCACAAATTCTAATCCCAATGAGAATCCCAGTTTCACTCTATCATTACCGCGATCTTATGTCGAAGGTGCTAGAATAAGGCTGAACATACCTAATCATTTTTCGAAAGATTACAAGAATGAGTTGTTGCAAGGGAATGCAGCAATTAGAAGTGCTGGTGAGGACAGGACATGGCAGGAACATAAATTGCAAGTAGGTGATGTCTGTAAATTTGAGATGACTCAACGAGAACCACTTCAATTCATAATTACTAATACTCCATCTACAAAGGAACCATGCCCGGAACAGTTTCAAGATTATGAAACTCCGAATTTACAAAATAAATTCAAGGTTTCTGTAACATCATTATTCATGTTGGTCATACCAAGTGAGTTCTTGAAGAGACACAATATATTTAGTGGAAATTCAGTTGAGCTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAGTTATGATCAACATCTTGATTATGGGTGGTTCACTAAAGGTTGGCCAGAATTCGTGAGAGAATGCAAAGTAAAGATCGGAGACACTTGTTTGTTTGAGATTATTGATTTGAAAAATCATGTGTTCAAGGTTTCAATTGTCCTAGATGTGTAG 678 0.3717 TNSYRGDMGKNAKKCTKTKDGNERSCTNSNPNENPSFTLSLPRSYVEGARIRLNIPNHFSKDYKNELLQGNAAIRSAGEDRTWQEHKLQVGDVCKFEMTQREPLQFIITNTPSTKEPCPEQFQDYETPNLQNKFKVSVTSLFMLVIPSEFLKRHNIFSGNSVELKVGEGTWFVEVSYDQHLDYGWFTKGWPEFVRECKVKIGDTCLFEIIDLKNHVFKVSIVLDV 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme745g00001 225 Gene3D - 120 224 IPR015300 -
Trme745g00001 225 PANTHER B3 DOMAIN-CONTAINING 134 222 - -
Trme745g00001 225 Pfam B3 DNA binding domain 135 215 IPR003340 GO:0003677
Trme745g00001 225 MobiDBLite consensus disorder prediction 22 39 - -
Trme745g00001 225 SUPERFAMILY DNA-binding pseudobarrel domain 32 109 IPR015300 -
Trme745g00001 225 MobiDBLite consensus disorder prediction 1 39 - -
Trme745g00001 225 CDD B3_DNA 134 221 IPR003340 GO:0003677
Trme745g00001 225 SMART B3_2 134 225 IPR003340 GO:0003677
Trme745g00001 225 ProSiteProfiles B3 DNA-binding domain profile. 129 225 IPR003340 GO:0003677
Trme745g00001 225 SUPERFAMILY DNA-binding pseudobarrel domain 137 221 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme745g00001 Trme-Chr745 914 2844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme745g00001 143 220 REM Transcription Factor Family AT1G49480 28.205 2.01e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trme745g00001 B3 1.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme745g00001 - - tpra:123913547 349.362