Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7448g00001 AATATGGATACATTAAGCCCTGCAGTCTTTGTCAATGCGGAACTGTTACCCTTTTATGTTGGAAGAAGAGTTCGTACTGTCATGCAGGTTTTGCGATCTGACGGTGTAGCTGTCATTGGAAAATCACCAGATGAGAAGCAGTTGATTGTAAAAGGATCACCCCCGCCCGCTCCTCTTACAAGTTTTGTAGAAGTTATTGGTATTGTTAACAGTGACAAGTCCATCAAAGCCGAGTTATGGACCAATTTTGGTGATGCAATTGATATGTTCAGCTACAATAAGCTTTGTCAGCTCGCAAATGGAGATTTTAAACACTTGTTCCTGTGA 327 0.4128 NMDTLSPAVFVNAELLPFYVGRRVRTVMQVLRSDGVAVIGKSPDEKQLIVKGSPPPAPLTSFVEVIGIVNSDKSIKAELWTNFGDAIDMFSYNKLCQLANGDFKHLFL 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7448g00001 108 SUPERFAMILY Nucleic acid-binding proteins 7 107 IPR012340 -
Trme7448g00001 108 CDD RPA3 7 107 - -
Trme7448g00001 108 Gene3D - 2 108 IPR012340 -
Trme7448g00001 108 Pfam Replication factor A protein 3 7 101 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trme7448g00001 108 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7448g00001 Trme-Chr7448 1124 1616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7448g00001 2 108 Core DNA Replication Machinery Family AT4G18590 60.748 1.53e-47 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7448g00001 K10740 - gmx:100306641 172.94