Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme74378g00001 ATGGTAACCTCTTCAAATATTGTGGTGGTCACGATTCTCATCATGGTTTGCAATTTCAACACAGCTATGTGGAAAGTTAATGGTTGTAACGGGAGGGATATCAGATGCGGACGTCACGGTCCGTTGATCCGATTTCCCTTCCGACTTAAAGACAGGGAAACAGAACATGGTTGCAGTTATAACGGTTTTGAGTTTACTTGTTCAGACACACACAAAACTCTACTTGAGCTCCCTTCAGATTCTGGTCCAATTATACTCGAAGTTATAGACATACTTTATGAAATCCAGCGTCTTTCATTACCCTGTCCGGTATATGTTGTTGACTCTCTTCATACATTCCTTGATTCGGGTTTGGACCCAATACTTTGCACCAAGACTCTAGATATTATTTCTTCAGCGGTGGCAACACCGGAGCAACATGTTGAATTTGAGAGGAGTTTTTTGGCTTTGACATGGTCTAAACCCAATTGTAGCAAATGTGAAAATGAAGGAAAGATGTGTAAACTTAAAAACAACGGAACTGGAGATGAGATAGATCTTGTTATTACCTGTTTTCTTCGCATACAGCTGCTCAAGCTTATCCCATAA 588 0.4048 MVTSSNIVVVTILIMVCNFNTAMWKVNGCNGRDIRCGRHGPLIRFPFRLKDRETEHGCSYNGFEFTCSDTHKTLLELPSDSGPIILEVIDILYEIQRLSLPCPVYVVDSLHTFLDSGLDPILCTKTLDIISSAVATPEQHVEFERSFLALTWSKPNCSKCENEGKMCKLKNNGTGDEIDLVITCFLRIQLLKLIP 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme74378g00001 195 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 100 IPR046948 -
Trme74378g00001 195 Pfam Wall-associated receptor kinase galacturonan-binding 29 99 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme74378g00001 Trme-Chr74378 11 730 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme74378g00001 36 185 C3H Transcription Factor Family AT2G46495 26.341 7.56e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme74378g00001 - - pcin:129316600 135.961