Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme74080g00001 ATGCCTAATGGAAGTTTAGACGACCACATATTTTGTGAGGAAGGAACAAGCACAACCCCGCTAAGTTGGCCTTTAAGGTACAAAATCCTATCAGGTGTCGCTTCTGCATTGAATTATCTCCACAACGAGTATGATCAAACAGTCGTTCACAGAGACCTTAAAGCAAGCAACATAATGCTAGACTCAGATTTCAACGCTCGTTTAGGAGATTTCGGGTTAGCGCGCGCACTAGAGAATGAAAAAACATCCTATGCAGAATTAGAAGGAGTACAAGGAACAATGGGATACATAGCACCAGAATGTTTCCACACAGGAAAAGCAACAAGAGAATCAGATGTTTATGGATTTGGTGCTGTGTTACTTGAAACCGTGTGTGGTCAAAGACCATGGACTAAAATCGAAGG 404 0.4208 MPNGSLDDHIFCEEGTSTTPLSWPLRYKILSGVASALNYLHNEYDQTVVHRDLKASNIMLDSDFNARLGDFGLARALENEKTSYAELEGVQGTMGYIAPECFHTGKATRESDVYGFGAVLLETVCGQRPWTKIEG 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme74080g00001 135 Pfam Protein kinase domain 21 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme74080g00001 135 FunFam probable L-type lectin-domain containing receptor kinase S.5 1 135 - -
Trme74080g00001 135 Gene3D Transferase(Phosphotransferase) domain 1 1 134 - -
Trme74080g00001 135 SUPERFAMILY Protein kinase-like (PK-like) 1 132 IPR011009 -
Trme74080g00001 135 PANTHER - 1 130 - -
Trme74080g00001 135 SMART serkin_6 1 131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme74080g00001 135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 48 60 IPR008271 GO:0004672|GO:0006468
Trme74080g00001 135 ProSiteProfiles Protein kinase domain profile. 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme74080g00001 Trme-Chr74080 80 483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme74080g00001 1 128 Receptor kinase-like Gene Family AT5G65600 57.031 2.79e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme74080g00001 Pkinase 2.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme74080g00001 - - tpra:123907446 279.641