LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme74056g00001	ATGTCTTCAAGTGGTGCTGCTAGTTCTGCATACAGAGGAGTCCGCAAGAGAAAATGGGGAAAATGGGTTTCCGAAATCCGCGAGCCAGGTACCAAGACAAGAATTTGGTTAGGAAGTTTTGAGACACCGGAGATGGCTGCAGCTGCATACGACGTCGCTGCTTTGCATTTTCGGGGACGTGAAGCTAGACTCAATTTCCCCGAACTCGCAAC	212	0.5	MSSSGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGREARLNFPELAT	71

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme74056g00001	71	FunFam	Ethylene-responsive transcription factor 2	9	68	-	-
	Trme74056g00001	71	PIRSF	PTI6	1	70	IPR017392	GO:0003700
	Trme74056g00001	71	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	7	70	-	-
	Trme74056g00001	71	SUPERFAMILY	DNA-binding domain	9	68	IPR016177	GO:0003677
	Trme74056g00001	71	ProSiteProfiles	AP2/ERF domain profile.	10	67	IPR001471	GO:0003700\|GO:0006355
	Trme74056g00001	71	CDD	AP2	11	69	IPR001471	GO:0003700\|GO:0006355
	Trme74056g00001	71	PRINTS	Ethylene responsive element binding protein signature	11	22	IPR001471	GO:0003700\|GO:0006355
	Trme74056g00001	71	PRINTS	Ethylene responsive element binding protein signature	33	49	IPR001471	GO:0003700\|GO:0006355
	Trme74056g00001	71	SMART	rav1_2	10	71	IPR001471	GO:0003700\|GO:0006355
	Trme74056g00001	71	Pfam	AP2 domain	10	59	IPR001471	GO:0003700\|GO:0006355
	Trme74056g00001	71	Gene3D	AP2/ERF domain	10	68	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme74056g00001	Trme-Chr74056	591	802	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme74056g00001	9	71	AP2-EREBP Transcription Factor Family	AT1G71450	93.651	2.73e-40	128

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Trme74056g00001		AP2	3.7e-14	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme74056g00001	-		-	aprc:113869810	139.043