Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme74033g00001 ATGAGGAAAACATTAGTCTTTTACACTGGACGTGCTCCTCATGGCCATAAAACTGATTGGATCATGCATGAGTACCGTCTTGATGATGATGATACTGCTGAAGTTCAG 108 0.4167 MRKTLVFYTGRAPHGHKTDWIMHEYRLDDDDTAEVQ 36
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme74033g00001 36 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 29 - -
Trme74033g00001 36 SUPERFAMILY NAC domain 1 32 IPR036093 GO:0003677|GO:0006355
Trme74033g00001 36 Pfam No apical meristem (NAM) protein 1 27 IPR003441 GO:0003677|GO:0006355
Trme74033g00001 36 Gene3D NAC domain 1 36 IPR036093 GO:0003677|GO:0006355
Trme74033g00001 36 ProSiteProfiles NAC domain profile. 1 36 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme74033g00001 Trme-Chr74033 593 700 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme74033g00001 1 30 NAC Transcription Factor Family AT2G46770 86.667 4.95e-15 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme74033g00001 NAM 5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme74033g00001 - - cave:132185650 74.7146