Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme73g00003 ATGACATTAATGCTAGTGTCGCTGCTCGCGAATGAACATGAACAGAATATCCCTTCCGTTGGATGTCCTTTCAATCTATCTTGTACACATGATAACAACAAGCATATTCTTGAACTACCTGCTCATCCAATCCCTATAAAACTCCGCGTTAGTTACATTAACTACAGATTGCAAGTTCTTGAAGCACATGATCTTGAAAATTGTCTTCCTCGACTCTTATTTCAGCAGTACAATTTCTCTTCATCAATTTATCCTTTTCAGATTGTCTCTTCGACGCTTTCACAATTTGATGATTTTACCAATATTAGTTTCTTTGATTGTTCTGCACTACGAAAACATCACCTGACAGACCACTATATACATTATTGGAACTACGAAAGTGTGCAGCAGGACATGATCTCTTGCCCAATTTATGTTGCAGGATTTGACGAAGATATAGTTGAATCAAACCTTGTATCTTGCACCAAACTGCCTGAACGAGTTTTGCCCCTTAATCTTCCGGGAGATTCTGTGTATGGGATACAACGAAACTCAATGTTACTGTCATGGTCGGAAACAAATCTTGACAAAGAATGCTTAAAATGTAAGCACAGATCAAAGAAGAAGACTATAACTATTCTTTTGTCTTCTGCAGGTGTAATCATTGGTTCGACTGTATTTGTTCTTCTATTTGGTGCCATTTTTCAAATATATTGGTATTTTAAGATGAAAGGTGAAGATCATGAAAGAATTGAAAACTTTTTGAAGGATTACAGAGCTTTRAAGCCAACTAGRTTCTCTTAYGCAGACTTAAAGAGAATTACACATAAWTTTAAAGATAAGTTAGGCGAAGGRGCTCATGGAGCTGTTTACAAAGGTAAATTGTCGAACCAAATTCTGGTTGCTGTGAAGATTCTTAATAATGCAGAGGGTGATGGGAAGGAGTTCATAAATGAAGTGGGAACCATGGGCAAAATCCACCATCTCAATGTCGTCCGTTTGCTTGGTTTCTGCGCAGATGGATTTCGCCGTGCTTTAGTTTATGACTTTTTTCCAAATGGTTCGTTGGAGAAATTCATTTCTCCTTCGAACAACAAAGATAATTTCCTTGGATGGGAAAAATTACAACAAATTGCTCTGGGCATAGCAAACGGGATTGAGTATCTGCACCAAGGTTGTGATCAAAGAATTCTACACTTTGACATCAATCCTCACAATGTTTTGATAGAT 1209 0.3722 MTLMLVSLLANEHEQNIPSVGCPFNLSCTHDNNKHILELPAHPIPIKLRVSYINYRLQVLEAHDLENCLPRLLFQQYNFSSSIYPFQIVSSTLSQFDDFTNISFFDCSALRKHHLTDHYIHYWNYESVQQDMISCPIYVAGFDEDIVESNLVSCTKLPERVLPLNLPGDSVYGIQRNSMLLSWSETNLDKECLKCKHRSKKKTITILLSSAGVIIGSTVFVLLFGAIFQIYWYFKMKGEDHERIENFLKDYRALKPTRFSYADLKRITHXFKDKLGEGAHGAVYKGKLSNQILVAVKILNNAEGDGKEFINEVGTMGKIHHLNVVRLLGFCADGFRRALVYDFFPNGSLEKFISPSNNKDNFLGWEKLQQIALGIANGIEYLHQGCDQRILHFDINPHNVLID 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme73g00003 403 FunFam serine/threonine-protein kinase PBS1-like 237 343 - -
Trme73g00003 403 PANTHER RUST RESISTANCE KINASE LR10-RELATED 235 403 IPR045874 GO:0004672
Trme73g00003 403 Gene3D Phosphorylase Kinase; domain 1 243 343 - -
Trme73g00003 403 SUPERFAMILY Protein kinase-like (PK-like) 251 403 IPR011009 -
Trme73g00003 403 SMART tyrkin_6 269 402 IPR020635 GO:0004713|GO:0006468
Trme73g00003 403 ProSitePatterns Protein kinases ATP-binding region signature. 275 297 IPR017441 GO:0005524
Trme73g00003 403 Pfam Protein tyrosine and serine/threonine kinase 271 403 IPR001245 GO:0004672|GO:0006468
Trme73g00003 403 ProSiteProfiles Protein kinase domain profile. 269 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme73g00003 403 Gene3D Transferase(Phosphotransferase) domain 1 344 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme73g00003 Trme-Chr73 5256 6587 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme73g00003 235 403 Receptor kinase-like Gene Family AT1G66910 47.059 4.46e-48 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme73g00003 PK_Tyr_Ser-Thr 6.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme73g00003 - - lja:Lj0g3v0280349.2 446.047