Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7380g00001 ACTTCAGTTGGGACTACGACATGCTACGTTAATAACCTACCGGAAGACATAGGAGAGAAAGAATTAGAAAGAACGTTTGAAAGATGGGGAAAGGTGGTAGATGTGTATATTGCAAGAAAAAGAAATAAAGCAGGGAGAATATTTGGATTCGTGAGATATGCAGGAGTGAAAGATGAGACATGGTTAGAAGAACAACTACAAGATGTCTGGTTTGGCTCTTACAAGGTGTGGGTGAACATTTCAAGATACGAGAAGCCCTCAACAAAAACAGTGAAAAGGAATCAGCATAAAGAAGAAAAGCATCCAGACCAAAGAATGATGGAGCTAGGCAACAACCAAGCCAAACCAAAGCATAATATGCGGGGAAGACAAAGTGCTAGAAAAGAAGGAGTGACATATGTTGAAGCGACAAGAAAATCAGGAGAAGGAAGAAGCAGCAAAGAAGACAATCACAAGGAAGATAACCAAGAAGARAGACAAAGGTTGCAAAAGGAACTYCAAAGCGGAGGAGACAAGGATGATGGAGGGTTGCAAATAACGATTAACGAAGAGGAGATGGAGTGGGCCAAAAAAGGATACGTCGGAGTCGTAAGGAACATCGAAGATATTCACTTGATACAACAACGACTGGAAGAAGACGGAATTACGTCGGTAAGAGTCATTCCTATGGGAGGCGATATAGTGTTCATGAAAGTGGATGAGAAGGAAGATATGTGA 717 0.4128 TSVGTTTCYVNNLPEDIGEKELERTFERWGKVVDVYIARKRNKAGRIFGFVRYAGVKDETWLEEQLQDVWFGSYKVWVNISRYEKPSTKTVKRNQHKEEKHPDQRMMELGNNQAKPKHNMRGRQSARKEGVTYVEATRKSGEGRSSKEDNHKEDNQEERQRLQKELQSGGDKDDGGLQITINEEEMEWAKKGYVGVVRNIEDIHLIQQRLEEDGITSVRVIPMGGDIVFMKVDEKEDM 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7380g00001 238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 54 IPR000504 GO:0003723
Trme7380g00001 238 SMART rrm1_1 7 79 IPR000504 GO:0003723
Trme7380g00001 238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 83 IPR000504 GO:0003723
Trme7380g00001 238 SUPERFAMILY RNA-binding domain, RBD 4 82 IPR035979 GO:0003676
Trme7380g00001 238 CDD RRM_SF 9 54 - -
Trme7380g00001 238 MobiDBLite consensus disorder prediction 86 177 - -
Trme7380g00001 238 Coils Coil 152 172 - -
Trme7380g00001 238 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 150 - -
Trme7380g00001 238 MobiDBLite consensus disorder prediction 132 171 - -
Trme7380g00001 238 Gene3D - 3 113 IPR012677 -
Trme7380g00001 238 MobiDBLite consensus disorder prediction 86 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7380g00001 Trme-Chr7380 1 717 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7380g00001 6 78 Eukaryotic Initiation Factors Gene Family AT1G22760 31.507 2.42e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7380g00001 - K14787 vvo:131638270 234.572