Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme73770g00001 ATGCCGCCACTTTCTCCAACACCGACACCGCCACCGCCAAAAAAGAAGCGAAGCCTCCCTGGAATGCCAGATCCAAATGCAGAAGTAATCGCTTTATCACCAAAAACATTGTTAACGACGAACCGTTTCATATGCGAGATCTGCAACAAAGGATTTCAACGGGAACAGAATCTGCAACTTCACCGGCGAGGACATAACATGCCGTGGAAGCTCCGTCAGCGAGCGAGTGAAGAAATCCGCAAGAAAGTGTACGTTTGTCCTGAGCCTTCCTGTGTACACCACAATCCGTCAAGAGCGTTAGGCGACCTGACCGGCGTGAAAAAGCACTTTAGTAGAAAGCACG 343 0.4985 MPPLSPTPTPPPPKKKRSLPGMPDPNAEVIALSPKTLLTTNRFICEICNKGFQREQNLQLHRRGHNMPWKLRQRASEEIRKKVYVCPEPSCVHHNPSRALGDLTGVKKHFSRKH 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme73770g00001 114 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Trme73770g00001 114 MobiDBLite consensus disorder prediction 1 26 - -
Trme73770g00001 114 SUPERFAMILY beta-beta-alpha zinc fingers 41 66 IPR036236 -
Trme73770g00001 114 Gene3D Classic Zinc Finger 22 91 - -
Trme73770g00001 114 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 65 IPR013087 -
Trme73770g00001 114 Pfam Zinc-finger double-stranded RNA-binding 43 65 IPR022755 -
Trme73770g00001 114 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 10 114 IPR031140 -
Trme73770g00001 114 FunFam protein indeterminate-domain 12-like 22 90 - -
Trme73770g00001 114 SMART c2h2final6 43 65 IPR013087 -
Trme73770g00001 114 SMART c2h2final6 84 114 IPR013087 -
Trme73770g00001 114 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme73770g00001 Trme-Chr73770 299 764 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme73770g00001 14 114 IDZ Gene Family AT3G50700 83.168 2.06e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme73770g00001 zf-C2H2_jaz 3.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme73770g00001 K25869 - psat:127082208 211.075