Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7376g00001 AACTTGGTTTACAATGTTGCCAAGATTTTGCCTCAGGAGATTGATAAAACACATCAACAAAGATGGGATGCTGTGATTGCTAATCAATATCTGTGTGATCTTAGGGAGGCAAAGAAACAGGGTAGAAAAGAAAAAAAGCACAAGGAAGCACAGGCAGTGTTGGCTGCTGCAACTGCAGCAGCAGCATCATCTTCTAGGCCAATGCCACGTGCCAAAGAGACTCTTTCTAGAGTTGCTGTCACTAGAGCTTCAACAGAGAAATATTCGGATTTTTCTCTGCCAAGCTCAGATTTTTCTAAGGGGCAACGTAAATCATGTGATATCTGCAGACGCTTTGAGAATATGTTAAATCCTATCCTAGTCTGCTCTGGTTGCAAGGTTGCAGTGCACTCAGTTTGCTATCGCAGTGTGAAGGAAACAACAGGTCCATGGTACTGTGAATTATGTGAAGATCTATTGTCCAGAAGTTCTGGTACATCTGATATAAATAGCTGGGAGAAGCCTTATTTTGTTGCAGAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAGTCATCTGATGGTCAATGGGTTCATGCCTTCTGTGCCGAGGAGACTGTGCCAAAAGGAGTTGATATTTGTTGCATCTGCCACCGCAGGCATGGTGTATGTATGAAGTGTTGCTATGGCCATTGCCTGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTTCATGATTGTGAGGACTGCTGCTGGGGGAAAGATTCAACACAAGGCTTACTGTGAAAAGCATAGTTCGGAGCAGAGAGCAAAGGCTGAAAATCAAAAGCATGGAGTTGAAGAGTTAAAAAGTATCAAGCAAATTAGGGTGAGACTTCCATATCTATTTTTTTCATTTTGA 894 0.4295 NLVYNVAKILPQEIDKTHQQRWDAVIANQYLCDLREAKKQGRKEKKHKEAQAVLAAATAAAASSSRPMPRAKETLSRVAVTRASTEKYSDFSLPSSDFSKGQRKSCDICRRFENMLNPILVCSGCKVAVHSVCYRSVKETTGPWYCELCEDLLSRSSGTSDINSWEKPYFVAECALCGGTTGAFRKSSDGQWVHAFCAEETVPKGVDICCICHRRHGVCMKCCYGHCLTTFHPSCARSAGLFMIVRTAAGGKIQHKAYCEKHSSEQRAKAENQKHGVEELKSIKQIRVRLPYLFFSF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7376g00001 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 265 IPR013083 -
Trme7376g00001 297 ProSiteProfiles Zinc finger PHD-type profile. 103 152 IPR019787 -
Trme7376g00001 297 Pfam PHD-finger 117 150 - -
Trme7376g00001 297 PANTHER PHD FINGER PROTEINS 105 268 - -
Trme7376g00001 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 152 IPR013083 -
Trme7376g00001 297 SMART PHD_3 208 263 IPR001965 -
Trme7376g00001 297 SMART PHD_3 105 150 IPR001965 -
Trme7376g00001 297 ProSitePatterns Zinc finger PHD-type signature. 106 149 IPR019786 -
Trme7376g00001 297 CDD ePHD 174 262 - -
Trme7376g00001 297 Pfam PHD-like zinc-binding domain 208 263 - -
Trme7376g00001 297 SUPERFAMILY FYVE/PHD zinc finger 95 150 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7376g00001 Trme-Chr7376 189 1819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7376g00001 106 277 C2H2 Transcription Factor Family AT3G14740 25.500 9.17e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme7376g00001 zf-HC5HC2H 2e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7376g00001 - - tpra:123896915 525.398