Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme73715g00001 CTCCACACCGCATGTGGCACGCCGGCGTACACAGCACCGGAGATTCTCCGTAGGAGTGGCGGTTACGACGGATCTAAAGCAGACGCGTGGTCCTGTGGCCTCATACTCTACGTACTTCTCGCCGGTTACCTTCCTTTCAGCGATTTAAATATTCCGGCGATGTGTAAGAAAATTTCCCGGCGAGATTACCAGTTTCCAGATTGGATATCAAAACGGGCGCGTTTCGTGATATATCGGTTACTTGACCCAAATCCGGAAAGCCGAATGAGTTTGGAGGGTTTATTTACGAACGAGTGGTTTAAAAAATCGTTAAAACCCGAATCCGAACCCAAAAAGAACGTTTTTGGGTTTGATTACGGAAACGAAGTGAAAATTTCGGGTTTAAACGCGTTTCATATAATATCTATGTCTTCGGGTTTGGATTTGAGTGGGTTATTTGAAACGACGTCGTCTCAAGGTGGTAATAATAGTAATAGTGTTAATAAGAGGGAAAAGAGGTTTACTTCAAGTGCAAAAATGGAAGTGATGGAGGAAAAGGTTAAGGAAGTGGGAGGGGTTTTTGGGTTTAAGGTTGAGATTGGGAAGAATAATGCAATTGGGTTGGTGAAAGGGAAAGTGGGTTTAGTAATTGAGGTGTTTGAGATTGTGCCTTCTCAACTTCTTTTAGTGGATGTTAAGGTGGTAGAGGGTGGTTTAGAGTTTGAGGATAATCATTGGGAGGATTGGAAAGTTGCTTTGCAAGATCTTGCGATTTCATGGCACAATGAAGAGTCTTCATGA 780 0.4321 LHTACGTPAYTAPEILRRSGGYDGSKADAWSCGLILYVLLAGYLPFSDLNIPAMCKKISRRDYQFPDWISKRARFVIYRLLDPNPESRMSLEGLFTNEWFKKSLKPESEPKKNVFGFDYGNEVKISGLNAFHIISMSSGLDLSGLFETTSSQGGNNSNSVNKREKRFTSSAKMEVMEEKVKEVGGVFGFKVEIGKNNAIGLVKGKVGLVIEVFEIVPSQLLLVDVKVVEGGLEFEDNHWEDWKVALQDLAISWHNEESS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme73715g00001 259 SUPERFAMILY Protein kinase-like (PK-like) 2 112 IPR011009 -
Trme73715g00001 259 CDD CIPK_C 129 247 - -
Trme73715g00001 259 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 226 - -
Trme73715g00001 259 Pfam NAF domain 128 192 IPR004041 GO:0007165
Trme73715g00001 259 Pfam Protein kinase domain 2 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme73715g00001 259 Gene3D Transferase(Phosphotransferase) domain 1 1 119 - -
Trme73715g00001 259 ProSiteProfiles NAF domain profile. 123 147 IPR018451 GO:0007165
Trme73715g00001 259 ProSiteProfiles Protein kinase domain profile. 1 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme73715g00001 259 SMART serkin_6 2 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme73715g00001 259 Gene3D Kinase associated domain 1, KA1 124 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme73715g00001 Trme-Chr73715 25 804 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme73715g00001 1 256 Miscellaneous Gene Families AT3G23000 46.565 1.07e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trme73715g00001 Pkinase 4.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme73715g00001 K12761 - gmx:100784173 340.502