Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7370g00001 TTTCTGGTGAACCTGCAGATTGACTACAAAGAAGATAACAGCACGTGGATTTGTGCCTTGTTGTTGGCAATATTATTTCAAGATAGAGATATCATACGGGCACATGCAACCACAAAGTCTGTACCAGCACTTGCCAATTTATTGAAGTCAGACGAAACCGAGAACAAATATTTTGCTGCACAATCAATAGCCAGCCTTGTTTGTAATGGTAGCAGGGGAACACTTCTGTCTGTAGCAAATTCTGGGGCAGCAGGTGGACTTATCTCTTTGCTTGGCTGTGCTGATACCGATATACAAGATCTTCTCGAAATGTCCGAGGAATTTTCTTTAGTGCCTTATCCTGATCAAGTGGCTCTAGAGAGGTTGTTTAGAGTTGATGATATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTTCTCAAACCAATTCCGGATCGCCCAGGTGCACCATTTTTAGCTCTCGGGCTTTTGACTCAGCTTGGTAGAGATTGTCCGTCAAATAAGACTATAATGGTAGAATCCGGGGCTTTAGAGGCTCTTACAAAGTATCTTTCCCTTGGTCCACGAGATGCAACTGAAGAAGCTGCTACAGATCTGTTAGGAATTCTGTTTAGTAGTGCTGATATACGAAAACACGACTCTGCATTTGGCGCTGTTAATCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGAGGTGCAAGGTATAGCGCTTCAAAAGCTTTGGAAAGTTTATTCTCTGCAGACCATATTAGAAACGCGGAGATTGCTCGACAAGCTGTTCAACCCTTGGTAGAAATTCTTAATACCGGTTCAGAAAGGGAACAGCATGCTGCAATTGCTGCATTGGTTGGGTTACTGAGCGAAAATCCATCAAGAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTATAAGATCCTTTCGTCAAATTGTTCAACGGACCTCAAAGGGGATGCTGCTGAATTGTGTTGTGCTCTTTTTGGTAATACAAGGATTCGGTCCACGGTGGCTGCTGCACGATGCATTGAACCACTAGTCTCTCTCCTTGCAACCGAGTTTAGTTCTGCTCATCATTCAGTTGTTCGGGCATTGGATAGGCTTGTTGACGACGAGCAACTGGCTGAATTAGTTGCTGCAAATGGTGCAGTTGTTCCTCTTGTTAGTCTACTGTCTAGTAGAAACTATGTACTTCACGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGACCTGCTTGTAAAATGGAAATGGTAAAAGCTGGAGTCATTGAAAGAATACTGGACATCTTACATGAAGCACCTGATTTTTTGTGCGCAGCTTTTGCAGAACTGTTGCGTATATTAACCAATAATGCTACCATATCTAAAGGACCATCGGCCGCTAAAGTTGTTGAGCCCTTGTTTTTGTTGTTGACAAGATATGATTTTGGGCCCNACGGACAGCACAGTGCAATGCAGGTTTTGGTTAATATCTTAGAACATCCAAAGTGTCGTGCTGATTATTCATTGACTTCTCACAAAGTTATTGAACCACTTATCCCTTTGCTTGATTCACCGATATCAGTAGTGCAACAGTTGGCTGCTGAGCTTCTTTCACATCTGCTCCTAGAAGAACATCTTCAGAAGGATCCCCTGACACCGAAAGTAATTGCCCCTCTTATAAGAATTCTTGGTTCTGGTATACCTTTATTGCAGCAGCGAGCTCTAAAGGCCCTAGTTAGTATTGCTCTAACATGGCCGAATGAAATTGCCAAAGAGGGTGGTGTTGTTGAGATTTCCAAAGTGATATTGCAAGCTGATCCTTCCCTTCCTCATGCTTTATGGGAATCTGCTGCATCTGTCCTGTCAA 1882 0.433 FLVNLQIDYKEDNSTWICALLLAILFQDRDIIRAHATTKSVPALANLLKSDETENKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLEMSEEFSLVPYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLGRDCPSNKTIMVESGALEALTKYLSLGPRDATEEAATDLLGILFSSADIRKHDSAFGAVNQLVAVLRLGGRGARYSASKALESLFSADHIRNAEIARQAVQPLVEILNTGSEREQHAAIAALVGLLSENPSRALAVADVEMNAVDVLYKILSSNCSTDLKGDAAELCCALFGNTRIRSTVAAARCIEPLVSLLATEFSSAHHSVVRALDRLVDDEQLAELVAANGAVVPLVSLLSSRNYVLHEAISRALVKLGKDRPACKMEMVKAGVIERILDILHEAPDFLCAAFAELLRILTNNATISKGPSAAKVVEPLFLLLTRYDFGPXGQHSAMQVLVNILEHPKCRADYSLTSHKVIEPLIPLLDSPISVVQQLAAELLSHLLLEEHLQKDPLTPKVIAPLIRILGSGIPLLQQRALKALVSIALTWPNEIAKEGGVVEISKVILQADPSLPHALWESAASVLS 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7370g00001 627 SUPERFAMILY ARM repeat 40 594 IPR016024 -
Trme7370g00001 627 SUPERFAMILY ARM repeat 15 99 IPR016024 -
Trme7370g00001 627 Gene3D - 2 124 IPR011989 -
Trme7370g00001 627 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 320 554 - -
Trme7370g00001 627 SMART arm_5 252 292 IPR000225 GO:0005515
Trme7370g00001 627 SMART arm_5 379 419 IPR000225 GO:0005515
Trme7370g00001 627 SMART arm_5 124 167 IPR000225 GO:0005515
Trme7370g00001 627 SMART arm_5 169 210 IPR000225 GO:0005515
Trme7370g00001 627 SMART arm_5 507 547 IPR000225 GO:0005515
Trme7370g00001 627 SMART arm_5 338 378 IPR000225 GO:0005515
Trme7370g00001 627 SMART arm_5 421 461 IPR000225 GO:0005515
Trme7370g00001 627 Gene3D - 125 303 IPR011989 -
Trme7370g00001 627 Gene3D - 304 627 IPR011989 -
Trme7370g00001 627 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 4 627 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Trme7370g00001 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 136 180 IPR000225 GO:0005515
Trme7370g00001 627 Coils Coil 626 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7370g00001 Trme-Chr7370 18 1899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7370g00001 137 398 U-box Gene Family AT1G71020 30.403 9.27e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7370g00001 - - cam:101494820 1080.86