Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme73655g00001 ATGTATGCTATCGGAGGAAGTGCTAATCCAACAATTAACAGTCAAGGAAACAGATTTGTTGCTCCTAATAACAGATTCAGCAAAGAGGTGACAAAGTATGAAGATGCAGCTGAGAGTCAATGGAAGCATTGGAATTGGAGATCAGAAGGAGACTTAATGGTAAATGGTGCATTTTTCACTGCATCAGGTGGTGGAGCTTCATCTAGCTATGCAAGAGCTTCAAGCTTAAGTGCAAGACCATCTTCCCTTGTCGGTTCCATAACAATAGCAGCTG 274 0.4197 MYAIGGSANPTINSQGNRFVAPNNRFSKEVTKYEDAAESQWKHWNWRSEGDLMVNGAFFTASGGGASSSYARASSLSARPSSLVGSITIAA 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme73655g00001 91 PRINTS Pollen allergen Amb family signature 73 91 IPR018082 -
Trme73655g00001 91 PRINTS Pollen allergen Amb family signature 44 68 IPR018082 -
Trme73655g00001 91 PRINTS Pollen allergen Amb family signature 2 21 IPR018082 -
Trme73655g00001 91 SUPERFAMILY Pectin lyase-like 1 84 IPR011050 -
Trme73655g00001 91 Gene3D - 1 91 IPR012334 -
Trme73655g00001 91 PANTHER PECTATE LYASE 18-RELATED 1 89 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme73655g00001 Trme-Chr73655 58 583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme73655g00001 1 88 Polysaccharide Lyase AT4G24780 81.818 1.56e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme73655g00001 K01728 - csav:115709412 141.739