Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme73520g00001 CCAGGAGGACCATGGGAGTTTGTTGCCCTTCTCCCTCTTTTTGACCCTCCTCGCCATGATAGCGCAGAAACAATCAGAAGAGCTCTTGATCTTGGTGTTAGTGTTAAAATGATCACTGGTGATCAACTTGCAATAGGAAAGGAAACAGGAAGGCGTCTAGGGATGGGGACTAACATGTATCCTTCATCGTCACTGCTTGGCGAAAATAAAGATCAATTAGGTGCTGTCTCCATTGATGATCTCATTGAGAATGCTGATGGTTTTGCTGGTGTCTTTCCTGAACACAAGTATGAGATTGTGAAGAGGTTACAAGCTAGAAAGCACATTTGTGGGATGACTGGTGATGGAGTAAATGATGCGCCTGCCTTAAAGATAGCTGACATAGGTATTGCAGTAGCAGATTCTACAGATGCTGCTCGAAGCGCTTCTGACATAGTGCTGACAGAACCTGGCTTGAGTGTCATCATAAGTGCAGTTTTAACTAGCCGTGCAATTTTCCAGAGAATGAAAAACTACACGGTAATTCCAAGACTATGA 537 0.4395 PGGPWEFVALLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGENKDQLGAVSIDDLIENADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADSTDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTVIPRL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme73520g00001 178 PANTHER CALCIUM-TRANSPORTING ATPASE 2 174 - -
Trme73520g00001 178 FunFam Plasma membrane ATPase 8 161 - -
Trme73520g00001 178 PRINTS P-type cation-transporting ATPase superfamily signature 9 20 - -
Trme73520g00001 178 PRINTS P-type cation-transporting ATPase superfamily signature 136 148 - -
Trme73520g00001 178 PRINTS P-type cation-transporting ATPase superfamily signature 31 41 - -
Trme73520g00001 178 PRINTS P-type cation-transporting ATPase superfamily signature 113 132 - -
Trme73520g00001 178 Gene3D - 6 150 IPR023214 -
Trme73520g00001 178 PRINTS H+-transporting ATPase (proton pump) signature 113 129 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme73520g00001 178 PRINTS H+-transporting ATPase (proton pump) signature 85 101 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme73520g00001 178 PRINTS H+-transporting ATPase (proton pump) signature 144 169 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme73520g00001 178 Pfam haloacid dehalogenase-like hydrolase 9 127 - -
Trme73520g00001 178 SUPERFAMILY HAD-like 8 159 IPR036412 -
Trme73520g00001 178 NCBIfam HAD-IC family P-type ATPase 88 173 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme73520g00001 Trme-Chr73520 2 774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme73520g00001 2 174 Primary Pumps ATPases AT5G62670 89.655 1.18e-106 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme73520g00001 K01535 - gmx:100806187 332.028