Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7341g00001 ATGTCCCCTCGCCCTGGATCCAACAATGATCAAGCTGTTGCTCTTCGCACTTCTGGAAACAAAAGTGCGTTCTACAATTGCGCCTTCTATGGGTTCCAGGACACGCTGTATGATCATGCAGGTTTTCACTATTTTAAAGAATGTTATATCCGAGGCATAGTTGACTTTGTGTTCGGCAATGGGAGATCCCTTTATGAGGGCTGCACTCTAGAGTCAATAGCCGAAAATGTGGGCTATACCACGGCTCAAAGTCGTCCAAGTTTGGCAACTGAGACCGGATTTTCGATCACAAATAGCAGAGTAATAGGCAGTGGTCAAGTGTATCTTGGGAGACCATGGGATGCATTCTCAAGAGTAATCTTCTCTTATACCAACATGGAAAATATTGTTCTCCCCCAAGGATGGGATGGCACTATGGGCAAAGACTACCACTTGTTAGTATTCCTTGCACGACTGCATACTACAGGGAATATAAATGTAGTGGACCTGGAACCAACTTTGCTGCAAGAGCTCCATGGGTTCACAGATTGA 531 0.452 MSPRPGSNNDQAVALRTSGNKSAFYNCAFYGFQDTLYDHAGFHYFKECYIRGIVDFVFGNGRSLYEGCTLESIAENVGYTTAQSRPSLATETGFSITNSRVIGSGQVYLGRPWDAFSRVIFSYTNMENIVLPQGWDGTMGKDYHLLVFLARLHTTGNINVVDLEPTLLQELHGFTD 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7341g00001 176 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 8 138 - -
Trme7341g00001 176 SUPERFAMILY Pectin lyase-like 6 139 IPR011050 -
Trme7341g00001 176 Gene3D - 2 149 IPR012334 -
Trme7341g00001 176 Pfam Pectinesterase 6 137 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7341g00001 Trme-Chr7341 1190 1878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7341g00001 3 156 Carbohydrate Esterase AT1G05310 41.358 2.99e-42 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7341g00001 K01051 - mtr:25495763 222.246