Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme73393g00001 CGCCTTCAGATCGGTCACTTAGAAGCGAAACACAAAGCTTTGGACAGTGTTGTTGAGGTTATGAAAGAGGATGAGAAGAATGTTTTGGCTGTTATGAGTAGGAGTAATATTGCTGCACTGGTTCAATTGCTTACAGCAACATCAACAAGGATAAGAGAGAAAACAGTTACTGTTATATGCTCGCTTGCCGAATCGGGTAGCTGCGAGGATTGGTTAGTTTCTGAAGGTGTTCTTCCAGCTCTTATAAGACTTGTTGAATCAGGAAGTGCTGTAGGTAAAGAAAAGGCTGCGATATCGCTTCAGAGGTTATCAATGTCGGCTGAAACATCGCGTGAAATAGTCGGACATGGTGGCGTGTGTCCGCTTGTTGAGCTTTGTCAAACCGGCGATTCTGTTTCGCAGGCTGCAGCAGCTTGTACATTGAAGAATATTTCAGCTGTTCCTGAGGTGAGACAGGTTTTGGCTGAACAAGGGATTGTTAGGGTTATGATCAATTTGTTAACTTGTGGAATGTTGTTAGGTTCCAAAGAATATGCAGCAGAATGTTTGCAGAATCTCACTGCAAGCAATGAGAGTCTAAAAAGAAGTGTTGTATCCGAAGGCGGTGTTAGGAGTCTTTTAGCTTATCTTGATGGTCCACTTCCTCAAGAATCCGCAGTCGCGGCATTAAGGAATTTGGTTGGATCGGTTTCTGAGACAACTTTGGTTTCATTAGGATTACTTCCTCGTTTGGTTCATGTTTTGAAATCCGGATCATCAGGAGCACAACAAGCAGCTGCATCAGCAATCTGCCGAGTTTGCAGCTC 806 0.438 RLQIGHLEAKHKALDSVVEVMKEDEKNVLAVMSRSNIAALVQLLTATSTRIREKTVTVICSLAESGSCEDWLVSEGVLPALIRLVESGSAVGKEKAAISLQRLSMSAETSREIVGHGGVCPLVELCQTGDSVSQAAAACTLKNISAVPEVRQVLAEQGIVRVMINLLTCGMLLGSKEYAAECLQNLTASNESLKRSVVSEGGVRSLLAYLDGPLPQESAVAALRNLVGSVSETTLVSLGLLPRLVHVLKSGSSGAQQAAASAICRVCSS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme73393g00001 269 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 76 118 IPR000225 GO:0005515
Trme73393g00001 269 SMART arm_5 106 146 IPR000225 GO:0005515
Trme73393g00001 269 SMART arm_5 229 268 IPR000225 GO:0005515
Trme73393g00001 269 SMART arm_5 24 64 IPR000225 GO:0005515
Trme73393g00001 269 SMART arm_5 147 188 IPR000225 GO:0005515
Trme73393g00001 269 SMART arm_5 189 228 IPR000225 GO:0005515
Trme73393g00001 269 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 268 - -
Trme73393g00001 269 Pfam Armadillo/beta-catenin-like repeat 111 146 IPR000225 GO:0005515
Trme73393g00001 269 Pfam Armadillo/beta-catenin-like repeat 234 267 IPR000225 GO:0005515
Trme73393g00001 269 Gene3D - 1 174 IPR011989 -
Trme73393g00001 269 Gene3D - 175 269 IPR011989 -
Trme73393g00001 269 SUPERFAMILY ARM repeat 4 267 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme73393g00001 2 259 U-box Gene Family AT2G23140 27.273 1.38e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme73393g00001 - - cit:127901361 446.817