Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme733236g00001 GGGTGGGTCCCATCTCTCGATGTAGGTTCACCGGAGAGTTTTTCTTCGTCTGGTTTTATGCCAGCGGTGATTGTTAAATCGGAGCCGGAGGTTCAGAGTTCGTCTGAGATAATTGTTTCAGTCCCGGTGGATGTGCCGGCGAAGGGGAAGCATTACAGGGGAGTGAGACGGCGGCCGTGGGGAAAATTTGCGGCGGAGATACGTGATCCGGCTAAAAATGGGGCGCGGGTTTGGCTTGGAACATTT 246 0.5407 GWVPSLDVGSPESFSSSGFMPAVIVKSEPEVQSSSEIIVSVPVDVPAKGKHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTF 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme733236g00001 82 PANTHER DNA-BINDING DOMAIN 36 82 IPR044808 GO:0003700|GO:0009873
Trme733236g00001 82 SUPERFAMILY DNA-binding domain 51 82 IPR016177 GO:0003677
Trme733236g00001 82 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Trme733236g00001 82 PRINTS Ethylene responsive element binding protein signature 75 82 IPR001471 GO:0003700|GO:0006355
Trme733236g00001 82 CDD AP2 50 82 IPR001471 GO:0003700|GO:0006355
Trme733236g00001 82 Pfam AP2 domain 51 82 IPR001471 GO:0003700|GO:0006355
Trme733236g00001 82 SMART rav1_2 51 82 IPR001471 GO:0003700|GO:0006355
Trme733236g00001 82 Gene3D AP2/ERF domain 50 82 IPR036955 GO:0003700|GO:0006355
Trme733236g00001 82 ProSiteProfiles AP2/ERF domain profile. 51 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme733236g00001 Trme-Chr733236 2 247 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme733236g00001 4 82 AP2-EREBP Transcription Factor Family AT4G17500 59.494 2.77e-23 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme733236g00001 AP2 1.5e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme733236g00001 K09286 - gmx:100819649 120.168