Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme72955g00001 GGCCTAATTCCAGATGTGCAAGGTTATTTCTCTGCCGACAGTTTTCTCGGTAATCCAGGACTATGTGGATATCCACTACAGAAAAATTGTTCCAGTCAGATTCTGGGGAGTACTTCTAGTAAGATAACAGAAGAAGGATCAAAGGGTCCTTCTAAAGAGCAGATACTTATCTATTCAGGATATGCTGCATTAGGTGTTATCATAATCCTTATTGTAGTCTTGAAGATATGTAGAGGAAAGAAACGAGGAAAGAAGATTGAAGCAGAATCAAACGGTGATATCGAGAAAACAAGATATGTTTCAAGTGAATCCAAAGCAGAAGAGGCAAGTAAATCAGGATTTTCAGTTTCTTCTGAAAATGGAATGGTCTCACAACAATCACTTATTGTTCTTGCAAGGCCAGTGGTGAATGAATTGAAAATGGAGGACTTGTTAAGAGCACCTGCTGAAATGATTGGGAGAGGAAAGAATGGAAGTCTTTATAAGGTTATGTTAACCAATGGAATAGTAGTGGTTGTGAAAAGGATTAAGGATTGGAGTATTTCTAGTGTTGAATTCAAGCAAAGAATGCAACTATTGAATCAAGCAAAGCATCCTCATGTTCTGTCACCTCTTGCTTTCTATGTTTCCAAACAAGAGAAGCTTTTGGTCTATGAATATCAACAAAATGGAAGTTTGTTCAAGCTTCTACATGGTAAATTTTAA 705 0.3702 GLIPDVQGYFSADSFLGNPGLCGYPLQKNCSSQILGSTSSKITEEGSKGPSKEQILIYSGYAALGVIIILIVVLKICRGKKRGKKIEAESNGDIEKTRYVSSESKAEEASKSGFSVSSENGMVSQQSLIVLARPVVNELKMEDLLRAPAEMIGRGKNGSLYKVMLTNGIVVVVKRIKDWSISSVEFKQRMQLLNQAKHPHVLSPLAFYVSKQEKLLVYEYQQNGSLFKLLHGKF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme72955g00001 234 Gene3D Phosphorylase Kinase; domain 1 112 220 - -
Trme72955g00001 234 ProSiteProfiles Protein kinase domain profile. 146 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme72955g00001 234 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 3 232 IPR046959 -
Trme72955g00001 234 ProSitePatterns Protein kinases ATP-binding region signature. 152 174 IPR017441 GO:0005524
Trme72955g00001 234 Pfam Protein kinase domain 150 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme72955g00001 234 SUPERFAMILY Protein kinase-like (PK-like) 150 233 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme72955g00001 Trme-Chr72955 68 772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme72955g00001 1 232 Receptor kinase-like Gene Family AT1G60630 33.600 4.75e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme72955g00001 Pkinase 5.5e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme72955g00001 - - vvo:131595445 349.362