Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme72940g00001 ATGCGCCTTCTGGACCACCCCAATGTTGTAACTTTGAAGCATTGTTTCTTTTCGACAACTGAAAAAGACGAGCTCTATCTTAACTTGGTACTTGAGTATGTTCCTGAGACTGTCCATCGTGTGATCAGACACTACAGCAAAATGAATCAGAGGATGCCATTGATATATGTAAAACTTTATACTTACCAGATATGTAGAGCACTAGCTTACATTCATAACTGTGTTGGAGTGTCTCATAGGGACATAAAACCTCAAAATTTACTGGTCAATCCTCACACCCACCAGCTGAAGCTTTGTGACTTTGGGAGTGCAAAAGTTCTGGTCAAAGGTGAACCAAACATATCTTACATCTGTTCTAGGTATTATAGAGCTCCTGAGCTTATATTT 387 0.3953 MRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYSKMNQRMPLIYVKLYTYQICRALAYIHNCVGVSHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIF 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme72940g00001 129 ProSiteProfiles Protein kinase domain profile. 1 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme72940g00001 129 SMART serkin_6 1 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme72940g00001 129 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 129 - -
Trme72940g00001 129 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Trme72940g00001 129 Pfam Protein kinase domain 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme72940g00001 129 Gene3D Phosphorylase Kinase; domain 1 1 35 - -
Trme72940g00001 129 SUPERFAMILY Protein kinase-like (PK-like) 1 128 IPR011009 -
Trme72940g00001 129 Gene3D Transferase(Phosphotransferase) domain 1 36 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme72940g00001 Trme-Chr72940 116 808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme72940g00001 1 127 MAP Kinase Gene Family AT1G18150 36.641 2.35e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trme72940g00001 Pkinase 1.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme72940g00001 K27413 - gmx:100817819 267.314