Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme72923g00001 GAAGAAGACGACGATAACAGAGACGAACCAAGAGAAGGTGCGGTCGAAGTTGGAAACCGAAGACCTAGAGGAAGACCACCTGGATCCAAAAACAGACCAAAACCACCTATCTTTGTAACAAGAGATAGCCCAAATGCTTTAAAGAGCCATGTCATGGAGGTAGCCGGTGGAGCCGACATAGCAGAAAGTGTAGCACAGTTTGCAAGGCGGCGTCAACGAGGCGTTTGTGTTCTAAGTGGAAGTGGAACTGTAGCTAATGTTACTCTTAGACAACCTTCAGCTCCTGGTGCTGTTGTAGCACTTCATGGTAGGTTTGAGATTTTGTCCTTAACTGGGACGTTTCTACCTGGTCCTGCTCCACCAGGTTCAACTGGTCTTACAGTATACCTGGCTGGAGGACAGGGTCAGGTAGTTGGAGGTTGTGTAGTTGGAACACTTGTTGCTGTTGGACCAGTTATGCTTATTTCTGCTACTTTTACTAATGCAACTTATGAGAGACTTCCACTTGAAGACGATGATAACGATAATGATAATAATAACGAAGGGCCTAGTTCTGCGGCCGGTGTACCAGGTGGAGGAGCATCTGGTGGATCACCTCCGCCGGGAATTGGTCATCATCAGTTGCAGCAAGGTGGGATTCCAGATCCATCTTCTATGCCTCCTTGGTATAATTTGCCACCAAATTTGTTGCCTAATAATGGAGGGCAGATGGGACACGAGGCTCTTGCTTGGGCTGCTGCTGCTGCTCATGGAAGGCCACCTTATTGA 768 0.4792 EEDDDNRDEPREGAVEVGNRRPRGRPPGSKNRPKPPIFVTRDSPNALKSHVMEVAGGADIAESVAQFARRRQRGVCVLSGSGTVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVVGGCVVGTLVAVGPVMLISATFTNATYERLPLEDDDNDNDNNNEGPSSAAGVPGGGASGGSPPPGIGHHQLQQGGIPDPSSMPPWYNLPPNLLPNNGGQMGHEALAWAAAAAHGRPPY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme72923g00001 255 PIRSF ESCAROLA 1 255 IPR014476 GO:0003680
Trme72923g00001 255 ProSiteProfiles PPC domain profile profile. 44 183 IPR005175 -
Trme72923g00001 255 MobiDBLite consensus disorder prediction 1 42 - -
Trme72923g00001 255 Pfam Plants and Prokaryotes Conserved (PCC) domain 49 160 IPR005175 -
Trme72923g00001 255 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 245 IPR014476 GO:0003680
Trme72923g00001 255 FunFam AT-hook motif nuclear-localized protein 47 174 - -
Trme72923g00001 255 SUPERFAMILY AF0104/ALDC/Ptd012-like 45 172 - -
Trme72923g00001 255 MobiDBLite consensus disorder prediction 168 227 - -
Trme72923g00001 255 CDD DUF296 48 131 IPR005175 -
Trme72923g00001 255 Gene3D - 48 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme72923g00001 Trme-Chr72923 41 808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme72923g00001 10 255 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 63.347 2.44e-94 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme72923g00001 - - gmx:102663643 296.589