Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme72514g00001 ATGCCCGATTCGTACTCTGGCAGCCTATCAGAGCTACCAGAACTAAGCCAAGGATCAACTGATCCCTTGATACTCAAAAACAAGTCTCCGAGATGGCACGAACAGCTCCAGTGTTGGTGCCTAAACTTCATGGGCCGTGTTACAGTTGCATCTGTAAAGAACTTTCAACTTGTAGCTTCTGTTGATCCGTCTCATAATGTTTCGCCTGCGGAGCAAGAAAGGGTAATCTTGCAGTTTGGAAAGATTGGGAAAGATATATTCACAATGGACTACTCATACCCACTCTCTGCCTTCCAAGCCTTTGCCATTTGCTTGACAAGCTTTGATACTAAACCCGCCTGTGAATGA 348 0.454 MPDSYSGSLSELPELSQGSTDPLILKNKSPRWHEQLQCWCLNFMGRVTVASVKNFQLVASVDPSHNVSPAEQERVILQFGKIGKDIFTMDYSYPLSAFQAFAICLTSFDTKPACE 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme72514g00001 115 MobiDBLite consensus disorder prediction 1 21 - -
Trme72514g00001 115 ProSitePatterns Tub family signature 2. 100 115 IPR018066 -
Trme72514g00001 115 PRINTS Tubby superfamily signature 43 59 IPR000007 -
Trme72514g00001 115 PRINTS Tubby superfamily signature 25 42 IPR000007 -
Trme72514g00001 115 PRINTS Tubby superfamily signature 93 115 IPR000007 -
Trme72514g00001 115 PRINTS Tubby superfamily signature 72 91 IPR000007 -
Trme72514g00001 115 SUPERFAMILY Tubby C-terminal domain-like 17 115 IPR025659 -
Trme72514g00001 115 Gene3D Tubby Protein; Chain A 3 115 IPR025659 -
Trme72514g00001 115 PANTHER TUBBY-RELATED 19 113 - -
Trme72514g00001 115 Pfam Tub family 20 110 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme72514g00001 Trme-Chr72514 45 392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme72514g00001 11 115 TUB Transcription Factor Family AT2G18280 79.245 5.26e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trme72514g00001 Tub 3.4e-50 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme72514g00001 K19600 - qsu:111998826 199.134