Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7246g00001 ATGAAGGAATTGGTGATAGCAGCATTCAATGCAACAGCTAATGAACTCTTGAAACAGATTGATAACTCAACACTTTACCATGAATTAGCTACCAATGACATGACAAAACAAGCTATGGAAATTTGCAAAGAAGTCCTTGGTTATGCAGTTGATGATGTTCATCAATCAATTAATACATTGGATAAATTTGAGCTAAGTAAGCTAGATGAATATGCTTATGATCTTAAGGTTTGGCTCGCAGGTACACTTACTCATCAACAAACATGTTTAGATGGATTTGAGAACACAACTACTCATGCAGGACAAACCATGGCTAAGGTTCTTAACACATCTTTGGAGCTAAGTAACAATGCTTTTGATATAATTAGTGGAGTTGCAGATATTATGAAAAGTCTTAACTTGAGTTCTTTAGCAAGTGCCATAAATCATAGGAAACTTTTGTCTGATGATGATGGTTTACCAACATGGGCTAGTCAAAGTCAAAGGAAACTTCTTGTGGCACCTGAGAGTATTAAGCCTAATGTTGTTGTTGCTCAAGATGGTACTGGACAGTTTAAGACTTTGACTGAGGCACTTAAACTTGTTCCTACTAAGAACAAAGTTCCTTTTGTTATTCATGTTAAGGCTGGTGTCTATAATGAGTATGTTACTTTGGATAAACATAGGGACCATGTTACTATTATTGGTGATGGTCCTACAAAGACCAGATTTACTGGCAGCAAAAACTATGTTGATGGTACTCAGACTTACCTCACTTCAACATTCAGTGTGAACTCTGCTCATTTCATGGCCATCAACGTTGGATTCGAGAACTCAGCAGGAGCTGAGAAGCACCAAGCAGTAGCCCTCCGTGTAACAGCAGACAAAGCAATTTTCTACAACTGTCACATGGACGGTTTCCAAGACACACTCTACGTACAATCAAAAAGACAATTCTACCGCGACTGCACCGTGACAGGAACCATCGACTTTGTCTTTGGTGATGCTGTCGGAGTTTTCCAAAACTGCAAGTTCATCGTCAAAAAGCCATTGGCAGATCAACAATGCATGGTAACAGCAGGCGGAAGAACCAAACCCGACAGTCCATCCGCCCTTGTTTTCCAAAACTGTCAATTCACCGGTGAACCAGACGTAGCTACCTTGGACCCCAAGATAGCATATTTGGGTAGACCATGGAGAAATTACTCCAAGGTTGTTATCATGGATTCTGAAATTGACGGTATCTTTGTACCAGAAGGTTATATGCCATGGATGGGAAGCGCTTTCGAAGATACATGTACTTATTATGAATACAACAATGTTGGTGCTGGTGCTAACACTGCAGGAAGAGTGAAGTGGCCAGGTTTTAAAGTCCTTACTGCCCCTGAAGCTGGTGATTATTATCCAGGAAAGTTTTTTGAACTTGCTAATTCAACTCAGCGTGATGCTTGGATTGTTGAAGCTGGAATTCCTTATTCAATTGGACCAAAACCAGCTGGACTACTTACACCTGCACCACAATAA 1503 0.4032 MKELVIAAFNATANELLKQIDNSTLYHELATNDMTKQAMEICKEVLGYAVDDVHQSINTLDKFELSKLDEYAYDLKVWLAGTLTHQQTCLDGFENTTTHAGQTMAKVLNTSLELSNNAFDIISGVADIMKSLNLSSLASAINHRKLLSDDDGLPTWASQSQRKLLVAPESIKPNVVVAQDGTGQFKTLTEALKLVPTKNKVPFVIHVKAGVYNEYVTLDKHRDHVTIIGDGPTKTRFTGSKNYVDGTQTYLTSTFSVNSAHFMAINVGFENSAGAEKHQAVALRVTADKAIFYNCHMDGFQDTLYVQSKRQFYRDCTVTGTIDFVFGDAVGVFQNCKFIVKKPLADQQCMVTAGGRTKPDSPSALVFQNCQFTGEPDVATLDPKIAYLGRPWRNYSKVVIMDSEIDGIFVPEGYMPWMGSAFEDTCTYYEYNNVGAGANTAGRVKWPGFKVLTAPEAGDYYPGKFFELANSTQRDAWIVEAGIPYSIGPKPAGLLTPAPQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7246g00001 500 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 125 IPR035513 -
Trme7246g00001 500 NCBIfam pectinesterase inhibitor domain 2 123 IPR006501 GO:0004857
Trme7246g00001 500 Gene3D - 171 489 IPR012334 -
Trme7246g00001 500 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 123 IPR035513 -
Trme7246g00001 500 SMART PMEI_2 1 121 IPR006501 GO:0004857
Trme7246g00001 500 ProSitePatterns Pectinesterase signature 1. 199 218 IPR018040 -
Trme7246g00001 500 Pfam Plant invertase/pectin methylesterase inhibitor 4 119 IPR006501 GO:0004857
Trme7246g00001 500 FunFam Pectinesterase 4 171 489 - -
Trme7246g00001 500 ProSitePatterns Pectinesterase signature 2. 318 327 IPR033131 -
Trme7246g00001 500 Pfam Pectinesterase 174 465 IPR000070 GO:0030599|GO:0042545
Trme7246g00001 500 CDD PMEI-like_3 2 126 - -
Trme7246g00001 500 PANTHER PECTINESTERASE 2 478 - -
Trme7246g00001 500 SUPERFAMILY Pectin lyase-like 171 466 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7246g00001 Trme-Chr7246 134 1832 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7246g00001 3 485 Carbohydrate Esterase AT5G49180 44.581 1.57e-160 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7246g00001 K01051 - gmx:100800194 774.237