Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme72415g00001 TCCAGTCGTTTTGATGAACTGCCTGACGATTTTGATCCTAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCACAAACTACAAATCTTTACGTTGGAAATCTCTCACCCCAGGTTGATGAAAATTTTCTTCTGCGCACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATAATGTGGCCTCGAACAGAGGAGGAGCGAAGGCGACAAAGAAACTGTGGTTTCGTTGCATTCATGAACAGAGCTGATGGACAGGCTGCTAAAGATGAAATGCAAGAGATTTTTAAGAAGTATAAGATGAAATGA 312 0.4103 SSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQEIFKKYKMK 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme72415g00001 103 Gene3D - 11 103 IPR012677 -
Trme72415g00001 103 SUPERFAMILY RNA-binding domain, RBD 22 95 IPR035979 GO:0003676
Trme72415g00001 103 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 103 IPR000504 GO:0003723
Trme72415g00001 103 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 96 IPR000504 GO:0003723
Trme72415g00001 103 PANTHER RNA PROCESSING PROTEIN LD23810P 16 103 - -
Trme72415g00001 103 MobiDBLite consensus disorder prediction 1 30 - -
Trme72415g00001 103 SMART rrm1_1 30 103 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme72415g00001 29 90 Eukaryotic Initiation Factors Gene Family AT3G16380 40.323 4.34e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme72415g00001 K12842 - pop:7489161 199.904