Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme72376g00001 AACAGCATCACAGTACTTTTCTTTGCAAAAGAAGGTGACGGTTGTGTCCTTAACTCGACTAAGGAAAATGTTCTTGCACCTGTTACTATACATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAACCATCTGGAACTGGTATCACTCTTTCAATGTTCGAGGAATCCGAGTTATTGAAAGTGGGCGACCTAGACGTCTATCCTGTAGCAGTTAAAGCAGATGCATCTTCCGGTGACGTGAACGGAACAAATGAAACTCCAACATCTGGTAATAAAACAAACACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCGGGTGAAGGTTGTTAAGCAGATATTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAACTTCAGTAGAGAGTGACTTGGATGGGAATGACCCCGGAAAAGAGTGTGTTATCTGCTTATCAGAACCTCGCGACACAACTGTCCTTCCTTGTCGCCACATG 510 0.4353 NSITVLFFAKEGDGCVLNSTKENVLAPVTIHFQQGLGQKFRQPSGTGITLSMFEESELLKVGDLDVYPVAVKADASSGDVNGTNETPTSGNKTNTNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGTSVESDLDGNDPGKECVICLSEPRDTTVLPCRHM 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme72376g00001 170 SUPERFAMILY RING/U-box 151 170 - -
Trme72376g00001 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 170 IPR013083 -
Trme72376g00001 170 MobiDBLite consensus disorder prediction 77 95 - -
Trme72376g00001 170 MobiDBLite consensus disorder prediction 76 95 - -
Trme72376g00001 170 PANTHER MAHOGUNIN 2 170 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme72376g00001 Trme-Chr72376 301 810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme72376g00001 3 170 C3H Transcription Factor Family AT3G09770 63.218 1.84e-68 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme72376g00001 - - gmx:100783831 281.182