Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7235g00001 TATGATGATAGAGCTACATCTCAGAAAATATTGCAAAAGCTAAAGCTTGAGAATTTTCAGCTGGGTAGGACTAAAGTGTTTCTCCGGGCTGGTCAAATTGGTGTTTTAGACTCTAGGCGGGCTGAAGTTTTGGACAATGCTGCAAAGTGTATTCAGTGTCGACTGCGTACATTTATAGCACACAGGGATTTCATCTCAATCCGAGCTGCTGCAGTTTCTCTTCAAGCATGCTGCAGGGGATGCCTTGCACGGAAGATATATGCTTCTAAACGAGAGACTGCAGCAGCTATCTCCATTCAGAAATATATTCGTATGTGTCTGATGAGGCGTGCTTACACGGCATTGTATTCTTCTGCTATCATCATACAATCAAATGTTCGTGGTTTCACAATTCGCCAAAGATTCTTGCATAGAAAAGAACACAAAGCTGCAACTATTATTCAG 444 0.4189 YDDRATSQKILQKLKLENFQLGRTKVFLRAGQIGVLDSRRAEVLDNAAKCIQCRLRTFIAHRDFISIRAAAVSLQACCRGCLARKIYASKRETAAAISIQKYIRMCLMRRAYTALYSSAIIIQSNVRGFTIRQRFLHRKEHKAATIIQ 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7235g00001 148 ProSiteProfiles IQ motif profile. 92 118 IPR000048 GO:0005515
Trme7235g00001 148 SMART iq_5 114 136 IPR000048 GO:0005515
Trme7235g00001 148 SMART iq_5 91 113 IPR000048 GO:0005515
Trme7235g00001 148 SMART iq_5 66 88 IPR000048 GO:0005515
Trme7235g00001 148 SMART iq_5 43 65 IPR000048 GO:0005515
Trme7235g00001 148 ProSiteProfiles Myosin motor domain profile. 1 41 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme7235g00001 148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 90 IPR027417 -
Trme7235g00001 148 ProSiteProfiles IQ motif profile. 115 144 IPR000048 GO:0005515
Trme7235g00001 148 ProSiteProfiles IQ motif profile. 67 96 IPR000048 GO:0005515
Trme7235g00001 148 PANTHER MYOSIN 6 147 - -
Trme7235g00001 148 Pfam IQ calmodulin-binding motif 46 64 IPR000048 GO:0005515
Trme7235g00001 148 Pfam IQ calmodulin-binding motif 68 87 IPR000048 GO:0005515
Trme7235g00001 148 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515
Trme7235g00001 148 Pfam IQ calmodulin-binding motif 93 112 IPR000048 GO:0005515
Trme7235g00001 148 Gene3D - 94 146 - -
Trme7235g00001 148 Gene3D - 42 93 - -
Trme7235g00001 148 Gene3D - 1 39 - -
Trme7235g00001 148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 139 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7235g00001 Trme-Chr7235 376 1223 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7235g00001 2 148 Myosins gene family AT4G33200 59.184 4.58e-54 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7235g00001 K10357 - gmx:100796413 252.292