Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme723179g00001 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTTGAGGTCGAGTCAAGTGACACTATCGATAATGTCAAAGCTAAGATTCAGGACAAAGAAG 103 0.4466 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 34
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme723179g00001 34 SUPERFAMILY Ubiquitin-like 1 34 IPR029071 -
Trme723179g00001 34 PRINTS Ubiquitin signature 11 31 IPR019956 -
Trme723179g00001 34 PRINTS Ubiquitin signature 32 34 IPR019956 -
Trme723179g00001 34 ProSiteProfiles Ubiquitin domain profile. 1 34 IPR000626 GO:0005515
Trme723179g00001 34 PANTHER UBIQUITIN 1 34 - -
Trme723179g00001 34 Gene3D - 1 34 - -
Trme723179g00001 34 FunFam Ubiquitin-like protein 1 30 - -
Trme723179g00001 34 Pfam Ubiquitin family 3 34 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme723179g00001 Trme-Chr723179 14 116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme723179g00001 1 34 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 5.66e-18 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme723179g00001 - K08770 cpap:110810573 67.781