Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme72290g00001 ATGGCAGTTCTACTTGAATCAATATTCAACAACACTGGAGGAGAAGTCGTCAAAAATGAAAATGGAAAGATTGAGATTCTGGGATCTCCAACTGAGACTGCCATCTTGGAATTCGGTCTGTCACTTGGTGGTGATTTCCACAAAGAACGACAAGTATCAAAACTTGTGAAAGTTGAACCATTTAATTCAATAAAGAAGCGCATGGGGGTAGTTCTACAGCTTCCTRATGGTGGYTACAGAGCACACTGCAAGGGWGCYTCTGAAATAATTCTCGCTGCATGTGACAAATTTGTAGACAAAAATGGCGAGGTTGTTCCACTTGATGAAGATTCCATCCGTCACTTGAATGATACAATTGAAAACTTTGCCAATGAAGCTCTCCGGACCCTTTGCCTTGCTTATGTGGATATTCATGATGAATTTTTAGTTGGAAGTCCTATTCCTATTGATGGTTACACTTGTATAGGAATAGTGGGTATTAAAGATCCAGTTCGACCCGGTGTTCGAGAGTCTGTAGCCATTTGTAGGGCAGCTGGTATTACTGTTAGGATGGTTACCGGAGACAACATAAATACTGCAAAGGCAATTGCTAGAGAATGTGGAATTTTAACAGATGGTATAGCGATTGAAGGCCCCGAATTCCGTGAGATGAGTGAGGAGAAATTGCTTGATATCATTCCCAAAATTCAG 690 0.4087 MAVLLESIFNNTGGEVVKNENGKIEILGSPTETAILEFGLSLGGDFHKERQVSKLVKVEPFNSIKKRMGVVLQLPBGGYRAHCKGASEIILAACDKFVDKNGEVVPLDEDSIRHLNDTIENFANEALRTLCLAYVDIHDEFLVGSPIPIDGYTCIGIVGIKDPVRPGVRESVAICRAAGITVRMVTGDNINTAKAIARECGILTDGIAIEGPEFREMSEEKLLDIIPKIQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme72290g00001 230 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 3 168 IPR023299 GO:0000166
Trme72290g00001 230 PRINTS P-type cation-transporting ATPase superfamily signature 178 188 - -
Trme72290g00001 230 PRINTS P-type cation-transporting ATPase superfamily signature 156 167 - -
Trme72290g00001 230 Pfam haloacid dehalogenase-like hydrolase 155 226 - -
Trme72290g00001 230 FunFam Calcium-transporting ATPase 1 163 - -
Trme72290g00001 230 FunFam copper-transporting ATPase 1 isoform X2 158 203 - -
Trme72290g00001 230 Gene3D - 1 158 IPR023299 GO:0000166
Trme72290g00001 230 Gene3D - 159 228 IPR023214 -
Trme72290g00001 230 Pfam Cation transport ATPase (P-type) 18 96 - -
Trme72290g00001 230 PANTHER CATION TRANSPORTING ATPASE 3 230 - -
Trme72290g00001 230 SUPERFAMILY HAD-like 147 221 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme72290g00001 Trme-Chr72290 54 743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme72290g00001 3 230 Primary Pumps ATPases AT1G27770 73.362 1.07e-115 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme72290g00001 K01537 - gmx:547998 401.364