Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme72208g00001 ATGACTGCAAAAGCAGAGATGGAATTTGCAGTTGAAGTGGAAGTACTTGGAAGGGTGAGGCATAGGAATTTGTTAGGATTGAGGGGATTCTATGCAGGAGGAGAAGAAAGGTTAATTGTGTATGATTACATGCCTAATCATAGTTTACTCACTCATTTACATGGTCAACTTGCCTCTGATTGTTTACTAGATTGGTCTAGAAGAATGAGCATAATAATYGGTGCAGCTGAAG 232 0.3922 MTAKAEMEFAVEVEVLGRVRHRNLLGLRGFYAGGEERLIVYDYMPNHSLLTHLHGQLASDCLLDWSRRMSIIIGAAE 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme72208g00001 77 Gene3D Transferase(Phosphotransferase) domain 1 2 77 - -
Trme72208g00001 77 PANTHER OS01G0253100 PROTEIN 3 77 - -
Trme72208g00001 77 Pfam Protein tyrosine and serine/threonine kinase 4 62 IPR001245 GO:0004672|GO:0006468
Trme72208g00001 77 SUPERFAMILY Protein kinase-like (PK-like) 4 76 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme72208g00001 Trme-Chr72208 477 708 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme72208g00001 1 76 Receptor kinase-like Gene Family AT1G68400 48.052 8.20e-19 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Trme72208g00001 PK_Tyr_Ser-Thr 5e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme72208g00001 - - gmx:100817283 150.599