Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7212g00001 TTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTAGGAATCGTTTGGATCTTTGGAGGTAACACCTCTTCTTCTGATGCTCCACAATTATACAGCTGTATTGGATATGTTATGCCATTTATACTTTGTGCAACTATTTGTTGCTGCCTACCCTGCATAATTTCTGCTTTGGATATTCGGGAGGATTTATCTCAAAATAGAGGAGCAACAGTAGAATCAATCAATTCTCTACCAGTCTACAAGTTCAAAGTGAAGAACAATGAAAATGGTGTTGATCAGAATATCAACACAGCTTTAGAAGAATGTGGGATTTTGGCTGCAGGGACAGAAAAAGAGCGAATACTCTCGGGAAAAGATGCTGTTTGCTGCATTTGCTTGGCAAAATATGCAGATAATGATGAACTTAGAGAGTTACCTTGCTCGCACGTATTTCATGTTCGATGTGTTGACAAATGGTTAAAGATAAATGCATCTTGTCCTCTTTGTAAAAGTGAAGTTGGTGCCAGTAATTAA 543 0.3794 FNGLVDHFKMALDCFFAVWFVVGIVWIFGGNTSSSDAPQLYSCIGYVMPFILCATICCCLPCIISALDIREDLSQNRGATVESINSLPVYKFKVKNNENGVDQNINTALEECGILAAGTEKERILSGKDAVCCICLAKYADNDELRELPCSHVFHVRCVDKWLKINASCPLCKSEVGASN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7212g00001 180 Pfam Ring finger domain 132 173 IPR001841 -
Trme7212g00001 180 SMART ring_2 132 172 IPR001841 -
Trme7212g00001 180 SUPERFAMILY RING/U-box 123 177 - -
Trme7212g00001 180 SMART ringv_2 131 173 IPR011016 GO:0008270
Trme7212g00001 180 FunFam E3 ubiquitin-protein ligase 115 180 - -
Trme7212g00001 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 180 IPR013083 -
Trme7212g00001 180 ProSiteProfiles Zinc finger RING-type profile. 132 173 IPR001841 -
Trme7212g00001 180 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 2 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7212g00001 Trme-Chr7212 848 1688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7212g00001 1 180 C3H Transcription Factor Family AT1G80400 64.211 4.11e-87 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7212g00001 - - gmx:100819516 327.02