Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme7201g00001 ATGGGACCATCTGATCCAGACTCAGGGAAAGGAAAGAGCAAGATGTCAAAGCATGTAACTCATGGCTTTCACTTGGTAAAGGGAAGATCAAATCATGCCATGGAAGACTACGTGGTTGCTGAATTCAAGCATGTTGATGACAATGAGTTGGGTTTATTTGCAATATTTGATGGTCACGCAGGTCATAGTGTACCTGATTACTTGCGGTCTCATTTGTTTGATAGTATCTTAAAAGAGCCTGATTTCTGGACTGAACCTGCGGAGAGTGTGAAGAGAGCATATAGTGAAACTGATTCTACTATTTTAGAGAAATCGGGTGATTTGGGTAGAGGAGGTTCAACTGCAGTTACAGCAATACTCATTAATTGTCAAAAGCTAGTAGTGGCCAATATTGGAGATTCCCGGGCTGTCTTATCCGAGAATGGCGTTGCTATACCACTGTCAGTTGATCATGAGCCAACAACAGAAAGCGATGATATAAAAAACAGAGGTGGTTTTGTATCTAATTTCCCAGGGGATGTTCCACGGGTTGATGGGCAATTAGCAGTGTCAAGGGCATTTGGCGACAAAAGCCTAAAGATACACATGACCTCAGAACCACATGTGACAGTGAAGGTGATAGATGATGGTGGAGAGTTTGTTATATTAGCCAGTGATGGGTTATGGAAGGTTATGTCAAATCAAGAAGCAGTTGATGCTATCAGAGATATTAAGGATGCTCGGGCAGCAGCAAAGCGTCTTACCGAAGAAGCGCTCAACAGGAAAAGCTCAGATGATATCTCTTGCATTGTTGTGAGGTTTCACTGA 807 0.4263 MGPSDPDSGKGKSKMSKHVTHGFHLVKGRSNHAMEDYVVAEFKHVDDNELGLFAIFDGHAGHSVPDYLRSHLFDSILKEPDFWTEPAESVKRAYSETDSTILEKSGDLGRGGSTAVTAILINCQKLVVANIGDSRAVLSENGVAIPLSVDHEPTTESDDIKNRGGFVSNFPGDVPRVDGQLAVSRAFGDKSLKIHMTSEPHVTVKVIDDGGEFVILASDGLWKVMSNQEAVDAIRDIKDARAAAKRLTEEALNRKSSDDISCIVVRFH 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme7201g00001 268 CDD PP2Cc 27 267 IPR001932 -
Trme7201g00001 268 SMART PP2C_SIG_2 29 267 IPR001932 -
Trme7201g00001 268 Coils Coil 230 250 - -
Trme7201g00001 268 SMART PP2C_4 16 265 IPR001932 -
Trme7201g00001 268 Pfam Protein phosphatase 2C 31 260 IPR001932 -
Trme7201g00001 268 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Trme7201g00001 268 ProSiteProfiles PPM-type phosphatase domain profile. 20 267 IPR001932 -
Trme7201g00001 268 Gene3D - 14 268 IPR036457 -
Trme7201g00001 268 PANTHER PROTEIN PHOSPHATASE 15 267 IPR015655 GO:0004722|GO:0006470
Trme7201g00001 268 SUPERFAMILY PP2C-like 16 268 IPR036457 -
Trme7201g00001 268 FunFam Probable protein phosphatase 2C 39 10 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme7201g00001 Trme-Chr7201 236 1817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme7201g00001 4 268 PP2C-type Phosphatase Gene Family AT3G15260 75.849 2.74e-154 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme7201g00001 K17506 - gmx:100787942 448.358