Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme720074g00001 AGGAAGCCTAACAACAACCAATTCAACACAATTACCGCAGACGGATCAGCGGATTCTAAGAACATCAACACTGGTATTGTGATCCAGGACTGCCAGATCCTCCCAGAGGCAGCATTGTTCCCTGTAAGGTTCCAAATCAAATCTTACTTGGGCAGGCCATGGAAGGCATATGCAAGGACAGTCTTCATGGAATCCACCATCGGTGACTTTATTCATCCAGATGGATGGGCCCCTTGGGCAG 241 0.4855 RKPNNNQFNTITADGSADSKNINTGIVIQDCQILPEAALFPVRFQIKSYLGRPWKAYARTVFMESTIGDFIHPDGWAPWA 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme720074g00001 80 PANTHER PECTINESTERASE 1 79 - -
Trme720074g00001 80 Pfam Pectinesterase 1 79 IPR000070 GO:0030599|GO:0042545
Trme720074g00001 80 Gene3D - 1 80 IPR012334 -
Trme720074g00001 80 SUPERFAMILY Pectin lyase-like 2 79 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme720074g00001 Trme-Chr720074 3 243 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme720074g00001 1 79 Carbohydrate Esterase AT2G47040 49.367 6.83e-24 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme720074g00001 K01051 - gmx:100815015 131.724